New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2726248	39 (0.660)	3 (0.050)	3/250	NT	7.4%	coding (408/1083 nt)	PP_2387	hypothetical protein
	?	NC_002947	= 2726273	38 (0.680)					coding (383/1083 nt)	PP_2387	hypothetical protein

CCGACGAGGTGGTGCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGA  >  NC_002947/2726104‑2726394                                                                                                                                                 |                                                                                                                                                   ccGACGAGGTGGTGCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGcaccacca                                                                                                                                                >  3:300501/1‑149 (MQ=255)    acgaGGTGGTGCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACAt                                                                                                                                             <  3:71350/149‑1 (MQ=255)      gaGGTGGTGCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATgg                                                                                                                                           <  4:300501/149‑1 (MQ=255)            gtgCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGt                                                                                                                                     >  5:283661/1‑149 (MQ=255)            gtgCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGt                                                                                                                                     >  2:241288/1‑149 (MQ=255)                         cATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCgg                                                                                                                         >  6:41541‑M2/1‑146 (MQ=255)                                 cGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCgccttggccaactcggccatgtggtggtgctcagt                                                                                                                 <  5:40065‑M1/148‑36 (MQ=255)                                  gCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCtggtgg                                                                                                                <  1:241288/148‑1 (MQ=255)                                        aCTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCtggtg                                                                                                                 >  6:289098/1‑141 (MQ=255)                                        aCTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCtggtg                                                                                                                 <  5:289098/141‑1 (MQ=255)                                              gagaAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCggtgc                                                                                                                      >  7:174940‑M2/1‑125 (MQ=255)                                              gagaAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCggtgc                                                                                                                      <  8:174940‑M2/130‑6 (MQ=255)                                                 aaaGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTCTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTCGGTCAGCAACatcatc                                                                                                 >  8:131904/1‑148 (MQ=255)                                                        tGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTg                                                                                         <  5:118664/149‑1 (MQ=255)                                                              gCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGc                                                                                   >  8:26177/1‑149 (MQ=255)                                                                      gTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGcc                                                                           <  6:283661/149‑1 (MQ=255)                                                                      gTGCTGCGGGGCGTTGGGACGTGGGAGGACTTCACACAGGGCGTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGGCAGGAACATCATCAATTCCTGGGTGGCGTTCAGcc                                                                           <  7:131904/149‑1 (MQ=255)                                                                               gTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCgg                                                                  >  5:367563/1‑149 (MQ=255)                                                                                      gTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGc                                                            <  7:26177/148‑1 (MQ=255)                                                                                          cTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAAca                                                                                                      >  7:175164/1‑102 (MQ=255)                                                                                          cTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAAca                                                                                                      <  8:175164/102‑1 (MQ=255)                                                                                          cTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGc                                                       >  3:328380/1‑149 (MQ=255)                                                                                          cTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGc                                                       >  7:318014/1‑149 (MQ=255)                                                                                            gCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGc                                                       >  1:156304/1‑147 (MQ=255)                                                                                              gAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGa                                                   >  5:26170/1‑149 (MQ=255)                                                                                                ggACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACt                                                 >  2:331519/1‑149 (MQ=255)                                                                                                    ttCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCgccttggccaactcggccatgtggtggtgctcagtggcc                                                                                                             <  1:358298‑M1/85‑40 (MQ=255)                                                                                                    ttCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCgccttggccaactcggccatgtggtggtgctcagtggcc                                                                                                             >  2:358298‑M1/1‑46 (MQ=255)                                                                                                    ttCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGc                                             >  3:269291/1‑149 (MQ=255)                                                                                                     tCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGcc                                            >  6:45985/1‑149 (MQ=255)                                                                                                       acacaGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTTGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGccc                                           <  4:328380/148‑1 (MQ=255)                                                                                                        cacaGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGt                                         >  5:26242/1‑149 (MQ=255)                                                                                                          caGGGCTTCGTGGGCCAGGCTGGTGAGGCCACTGAGCACCACCACATGGCCGAGGTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGa                                       <  6:83034/149‑1 (MQ=255)                                                                                                                ttCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGACGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATc                                  >  7:192118/1‑148 (MQ=255)                                                                                                                   gTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGAc                               <  1:331519/148‑1 (MQ=255)                                                                                                                   gTGGGCCAGGCTGTGGAGGCCACGGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACa                              <  6:167586/149‑1 (MQ=255)                                                                                                                              tGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGcc                   >  2:143307/1‑149 (MQ=255)                                                                                                                               gTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCa                  >  2:46516/1‑149 (MQ=255)                                                                                                                                ttGAGGCCACTGAGCACCACCACATTGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCATGGGTGGCGTTAATCCCGCAGCCGGCCAGGCTCAGCCAGACTTAGCCCGTGAGCATCGACAGGTGCGAGGCCAc                 >  5:26061/1‑149 (MQ=255)                                                                                                                                  gAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGTTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTACAGACCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACtg               >  2:317156/1‑149 (MQ=255)                                                                                                                                   aGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACtgt              <  2:351955/149‑1 (MQ=255)                                                                                                                                   aGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACtgt              <  6:367563/149‑1 (MQ=255)                                                                                                                                   aGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACtgt              <  5:45985/149‑1 (MQ=255)                                                                                                                                    ggCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaa                                                                             <  1:358298‑M2/85‑47 (MQ=255)                                                                                                                                    ggCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaa                                                                             >  2:358298‑M2/1‑39 (MQ=255)                                                                                                                                       cACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTgtgtgt          >  8:45001/1‑149 (MQ=255)                                                                                                                                        aCTGAGCACCACCACATGGCCGAGTTGGCCAAGGCggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaagtcctcgcaggtaccaacgacccgcagcacgccaaggcctaccaggcctttctcaacagttttagcg          <  5:40065‑M2/148‑114 (MQ=255)                                                                                                                                          tGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTtcg       >  7:105593/1‑149 (MQ=255)                                                                                                                                            aGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGTGGCCACTGTGTGTtcgt      <  8:318014/148‑1 (MQ=255)                                                                                                                                             gCACCgccttggccaactcggccatgtggtggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaagtcctcgcaggtaccaacgacccgcagcacgccaaggcctaccaggcctttctc                       >  7:174940‑M1/1‑5 (MQ=255)                                                                                                                                             gCACCgccttggccaactcggccatgtggtggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaagtcctcgcaggtaccaacgacccgcagcacgccaaggcctaccaggcctttctc                       <  8:174940‑M1/130‑126 (MQ=255)                                                                                                                                                ccgccttggccaactcggccatgtggtggtgctcagtggcctcaacagcctggcccacgaagccctgtgtgaagtcctcgcaggtaccaacgacccgcagcacgccaaggcctaccaggcctttctcaacagttttagcgaaggcatg  >  6:41541‑M1/1‑2 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CCGACGAGGTGGTGCGCAGGGCTGCATGCCTTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGA  >  NC_002947/2726104‑2726394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.