New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2740726	39 (0.660)	3 (0.050)	3/248	NT	7.5%	coding (3105/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2740749	37 (0.660)					coding (3128/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

CGGCGGTCGGTGGGCGTGGGGGAACTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAA  >  NC_002947/2740586‑2740869                                                                                                                                             |                                                                                                                                                cggcggTCGGTGGGCGTGGGGGAACTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGa                                                                                                                                         <  8:205526/149‑1 (MQ=255)      gtcggtGGGCGTGGGGGAACTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTc                                                                                                                                    <  8:206080/149‑1 (MQ=255)       tcggtGGGCGTGGGGGAACTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCt                                                                                                                                   <  8:48851/149‑1 (MQ=255)                       aaCTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGggcacctccagaaggtcaaggtgcagcagc                                                                                                                   <  3:193429‑M1/149‑31 (MQ=255)                          tGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGAc                                                                                                                                        <  2:254211/125‑1 (MQ=255)                          tGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTa                                                                                                                <  7:103803/149‑1 (MQ=255)                                tCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                          <  4:8594/149‑1 (MQ=255)                                      cacaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCttt                                                                                                     <  1:319384/148‑1 (MQ=255)                                      cacaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTc                                                                                                    >  8:120870/1‑149 (MQ=255)                                       acaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                          <  8:217460/142‑1 (MQ=255)                                       acaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                          >  7:217460/1‑142 (MQ=255)                                          ggAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGggcacctccagaaggccaaggtgcagcagcga                                                                                                                 <  1:13439‑M1/132‑33 (MQ=255)                                          ggAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGggcacctccagaaggccaaggtgcagcagcga                                                                                                                 >  2:13439‑M1/1‑100 (MQ=255)                                           gAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                          <  5:237994/138‑1 (MQ=255)                                           gAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                          >  6:237994/1‑138 (MQ=255)                                                  tCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCa                                                                                         >  4:85636/1‑148 (MQ=255)                                                                 gCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTgg                                                                                                         >  7:212552/1‑117 (MQ=255)                                                                 gCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTgg                                                                                                         <  8:212552/117‑1 (MQ=255)                                                                  cAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                         <  7:120870/148‑1 (MQ=255)                                                                           aTCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                         <  5:311749/139‑1 (MQ=255)                                                                           aTCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                         >  6:311749/1‑139 (MQ=255)                                                                                gCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGAcg                                                          >  5:244779/1‑149 (MQ=255)                                                                                 cGGCTTGCCCAACATACCCCCACAGGTCTGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGAcgc                                                         >  1:209957/1‑149 (MQ=255)                                                                                       gCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTc                                                   >  5:237343/1‑149 (MQ=255)                                                                                       gCCCAACATACCCCCACAGGTCAGATTAAGAGGTGTGACCAGCCTGTCGCTGCTGAACCTTGACCTTCTGGAGGTGCCAAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTc                                                   >  7:55026/1‑149 (MQ=255)                                                                                         ccAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCGAACCTGCAAACCCTCGATCTGGGAGGGACCCTGTTGACGCGCCTTCCg                                                 >  8:278727/1‑149 (MQ=255)                                                                                                aCCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGt                                          <  8:55026/149‑1 (MQ=255)                                                                                                aCCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGt                                          >  2:16012/1‑149 (MQ=255)                                                                                                  ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGtt                                         >  8:171272/1‑148 (MQ=255)                                                                                                  ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGtt                                         <  7:171272/148‑1 (MQ=255)                                                                                                  ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtg                                        >  6:157939/1‑149 (MQ=255)                                                                                                   cccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgc                                       <  2:209957/149‑1 (MQ=255)                                                                                                     cacaGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgctg                                     >  2:84200/1‑149 (MQ=255)                                                                                                      acaGGTCAGCTTCAGAGGTGTGACCTGCCTGGCGCTGCTGCACCTTGACCTTCTGGAGGGGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCGTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgctgc                                    <  5:358140/149‑1 (MQ=255)                                                                                                           tCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGa                                 >  7:138316/1‑147 (MQ=255)                                                                                                              gCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAgcg                            <  8:138316/149‑1 (MQ=255)                                                                                                                      ggTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCg                    <  3:85636/149‑1 (MQ=255)                                                                                                                          tgACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCAt                <  6:244779/149‑1 (MQ=255)                                                                                                                              cAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGa            <  5:157939/149‑1 (MQ=255)                                                                                                                                     tCGCTGCTGCACCTTGGCCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcc                      >  2:13439‑M2/1‑32 (MQ=255)                                                                                                                                     tCGCTGCTGCACCTTGGCCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcc                      <  1:13439‑M2/132‑101 (MQ=255)                                                                                                                                     tCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGAc     <  6:237343/149‑1 (MQ=255)                                                                                                                                       gctgctGCACCTTGACCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcctgtgcattgatttgcagtt   <  3:193429‑M2/149‑120 (MQ=255)                                                                                                                                        ctgctgCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACcaa  >  5:137742/1‑149 (MQ=255)                                                                                                                                        ctgctgCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGAGCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACcaa  >  7:123937/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                CGGCGGTCGGTGGGCGTGGGGGAACTGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAA  >  NC_002947/2740586‑2740869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.