New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2740726	39 (0.660)	3 (0.050)	3/248	NT	7.5%	coding (3105/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2740749	37 (0.660)					coding (3128/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

TGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGATCGTCCTGAACATCG  >  NC_002947/2740611‑2740892                                                                                                                                           |                                                                                                                                                tGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTa                                                                                                                                       <  7:103803/149‑1 (MQ=255)       tCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                                                 <  4:8594/149‑1 (MQ=255)             cacaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCttt                                                                                                                            <  1:319384/148‑1 (MQ=255)             cacaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTc                                                                                                                           >  8:120870/1‑149 (MQ=255)              acaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                                                 <  8:217460/142‑1 (MQ=255)              acaGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                                                 >  7:217460/1‑142 (MQ=255)                  gAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                                                 >  6:237994/1‑138 (MQ=255)                  gAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTg                                                                                                                                 <  5:237994/138‑1 (MQ=255)                         tCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCa                                                                                                                >  4:85636/1‑148 (MQ=255)                                        gCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTgg                                                                                                                                <  8:212552/117‑1 (MQ=255)                                        gCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTgg                                                                                                                                >  7:212552/1‑117 (MQ=255)                                         cAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                                                <  7:120870/148‑1 (MQ=255)                                                  aTCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                                                <  5:311749/139‑1 (MQ=255)                                                  aTCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTggga                                                                                                >  6:311749/1‑139 (MQ=255)                                                       gCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGAcg                                                                                 >  5:244779/1‑149 (MQ=255)                                                        cGGCTTGCCCAACATACCCCCACAGGTCTGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGAcgc                                                                                >  1:209957/1‑149 (MQ=255)                                                              gCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTc                                                                          >  5:237343/1‑149 (MQ=255)                                                              gCCCAACATACCCCCACAGGTCAGATTAAGAGGTGTGACCAGCCTGTCGCTGCTGAACCTTGACCTTCTGGAGGTGCCAAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTc                                                                          >  7:55026/1‑149 (MQ=255)                                                                ccAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCGAACCTGCAAACCCTCGATCTGGGAGGGACCCTGTTGACGCGCCTTCCg                                                                        >  8:278727/1‑149 (MQ=255)                                                                       aCCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGt                                                                 <  8:55026/149‑1 (MQ=255)                                                                       aCCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGt                                                                 >  2:16012/1‑149 (MQ=255)                                                                         ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGtt                                                                >  8:171272/1‑148 (MQ=255)                                                                         ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGtt                                                                <  7:171272/148‑1 (MQ=255)                                                                         ccccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtg                                                               >  6:157939/1‑149 (MQ=255)                                                                          cccACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgc                                                              <  2:209957/149‑1 (MQ=255)                                                                            cacaGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgctg                                                            >  2:84200/1‑149 (MQ=255)                                                                             acaGGTCAGCTTCAGAGGTGTGACCTGCCTGGCGCTGCTGCACCTTGACCTTCTGGAGGGGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCGTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTtgctgc                                                           <  5:358140/149‑1 (MQ=255)                                                                                  tCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGa                                                        >  7:138316/1‑147 (MQ=255)                                                                                     gCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAgcg                                                   <  8:138316/149‑1 (MQ=255)                                                                                             ggTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCg                                           <  3:85636/149‑1 (MQ=255)                                                                                                 tgACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCAt                                       <  6:244779/149‑1 (MQ=255)                                                                                                     cAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGa                                   <  5:157939/149‑1 (MQ=255)                                                                                                            tCGCTGCTGCACCTTGGCCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcc                                             >  2:13439‑M2/1‑32 (MQ=255)                                                                                                            tCGCTGCTGCACCTTGGCCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcc                                             <  1:13439‑M2/132‑101 (MQ=255)                                                                                                            tCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGAc                            <  6:237343/149‑1 (MQ=255)                                                                                                              gctgctGCACCTTGACCTTCTGGAGGTGCCcagcagcgacaggctggtcacacctctgaagctgacctgtgggggtatgttgggcaagccgctcgatctgaaattgcagaacatgacgtggaggttttcctgtgcattgatttgcagtt                          <  3:193429‑M2/149‑120 (MQ=255)                                                                                                               ctgctgCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACcaa                         >  5:137742/1‑149 (MQ=255)                                                                                                               ctgctgCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGAGCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACcaa                         >  7:123937/1‑149 (MQ=255)                                                                                                                        cTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGAt                >  4:11512/1‑149 (MQ=255)                                                                                                                                    gAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGATc               <  7:37570/138‑1 (MQ=255)                                                                                                                                    gAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGATc               >  8:37570/1‑138 (MQ=255)                                                                                                                                       gTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGATCGTCCTGAACATCg  >  2:91552/1‑148 (MQ=255)                                                                                                                                          cccAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCAGGCAGGGCACCTGTTGCCGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGAACgac            >  5:309258/1‑133 (MQ=255)                                                                                                                                           |                                                                                                                                                TGCAAATCAATGCACAGGAAAACCTCCACGTCATGTTCTGCAATTTCAGATCGAGCGGCTTGCCCAACATACCCCCACAGGTCAGCTTCAGAGGTGTGACCAGCCTGTCGCTGCTGCACCTTGACCTTCTGGAGGTGCCCAGCAGCCTATTGCTGGCTTTCCCTAACCTGCAAACCCTCGATCTGGGAGGGAACCTGTTGACGCGCCTTCCGCAGCCGTTGCTGCAGATAGCGCAGCTGCGGCATCTGAGCCTGACCAACAACCGGATCGTCCTGAACATCG  >  NC_002947/2740611‑2740892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.