New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2987261	28 (0.480)	4 (0.070)	3/254	NT	9.9%	coding (1138/2991 nt)	PP_2612	membrane protein
	?	NC_002947	4109346 =	46 (0.810)					coding (1168/2991 nt)	PP_3616	membrane protein

TTCGTCGCGGTCGTAACAGGCCAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTGGGGGAATAGTCTTCATGGGTGAGGGCCTGGAAATGTGACTCGGCCG  >  NC_002947/2987115‑2987374                                                                                                                                                   |                                                                                                                  ttCGTCGCGGTCGTAACAGGCCAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGcgcgt                                                                                                                 <  1:175796/149‑1 (MQ=34)               aaCAGGCCAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAg                                                                                                    >  4:362498/1‑148 (MQ=34)                 cAGGCCAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGaa                                                                                                 <  4:185230/149‑1 (MQ=34)                     ccAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGGTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAgcgc                                                                                             <  2:166680/149‑1 (MQ=21)                       aGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCg                                                                                           >  3:180260/1‑149 (MQ=34)                         tGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGt                                                                                         <  4:114443/149‑1 (MQ=34)                              cAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTg                                                                                    <  3:362498/149‑1 (MQ=34)                               aGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGt                                                                                   <  8:195337/149‑1 (MQ=34)                                gCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTc                                                                                  <  4:359994/149‑1 (MQ=34)                                 ccAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAgcgc                                                                                             <  4:300898/137‑1 (MQ=34)                                 ccAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAgcgc                                                                                             >  3:300898/1‑137 (MQ=34)                                 ccAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCg                                                                                 <  4:310243/149‑1 (MQ=34)                                  cAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGcgcgtc                                                                                                                <  2:32723/117‑1 (MQ=35)                                  cAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGcgcgtc                                                                                                                >  1:32723/1‑117 (MQ=35)                                  cAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGa                                                                                <  1:284759/149‑1 (MQ=34)                                                 aTCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCGAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTgcg                                                                 >  5:118905/1‑149 (MQ=21)                                                   cAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTgcgc                                                                >  5:314196/1‑148 (MQ=34)                                                    aaTGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCa                                                              <  7:12764/149‑1 (MQ=34)                                                                   ggCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTgg                                               <  2:286722/149‑1 (MQ=32)                                                                    gCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGt                                                                                   <  4:80136/112‑1 (MQ=32)                                                                    gCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGt                                                                                   >  3:80136/1‑112 (MQ=32)                                                                     ccGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTgggg                                             >  4:287393/1‑149 (MQ=32)                                                                           ccagccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGGGAGGAAGCGCCGGGATTTGTCGAGATCGAGGCGCTGCGCCAGGCGCGCACCATTGCGGGAATAg                                       >  8:123484/1‑149 (MQ=255)                                                                           ccagccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTGGGGGAATAg                                       >  2:236410/1‑149 (MQ=32)                                                                           ccagccagGCGTCATGATCGTTGATGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCTAGGAAGCGCCGGTATTTGTCGACCTCGAGGCGCTGCGCCAGGAGCGCACCCTTGGGGGAAAAg                                       >  8:179958/1‑149 (MQ=11)                                                                               ccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCa                                                              <  4:346506/122‑1 (MQ=32)                                                                               ccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCa                                                              >  3:346506/1‑122 (MQ=32)                                                                               ccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTg                                                >  2:348706/1‑136 (MQ=32)                                                                               ccagGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTg                                                <  1:348706/136‑1 (MQ=32)                                                                                 agGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTgcgc                                                                >  8:280305/1‑118 (MQ=32)                                                                                 agGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTgcgc                                                                <  7:280305/118‑1 (MQ=32)                                                                                                                cAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCaacctggccttgcaagccagcaacgatcatgacgtctggctggcgacggccgaatcccaacacattgataacccctacagcctggctgcggcactggcctgttacgaccgcga  >  7:250860‑M1/1‑36 (MQ=255)                                                                                                                cAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCaacctggccttgcaagccagcaacgatcatgacgtctggctggcgacggccgaatcccaacacattgataacccctacagcctggctgcggcactggcctgttacgaccgcga  >  7:245721‑M1/1‑36 (MQ=255)                                                                                                                  ggTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCaacctggccttgcaagccagcaacgatcatgacgcctggctggcgacggccgaaccccaa                                                       >  2:280411‑M1/1‑34 (MQ=255)                                                                                                                  ggTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCaacctggccttgcaagccagcaacgatcatgacgcctggctggcgacggccgaaccccaa                                                       <  1:280411‑M1/94‑61 (MQ=255)                                                                                                                                                   |                                                                                                                  TTCGTCGCGGTCGTAACAGGCCAGTGCCGCAGCCAGGCTGTAGGGGTTATCAATGTGTTGGGGTTCGGCCGTCGCCAGCCAGGCGTCATGATCGTTGCTGGCTTGCAAGGCCAGGTTGCGCAGGGCGGCAATCCGTCGTTCCAGCGCGTCGCGTTCGGCGAGGAAGCGCCGGTATTTGTCGACATCGAGGCGCTGCGCCAGGCGCGCACCATTGGGGGAATAGTCTTCATGGGTGAGGGCCTGGAAATGTGACTCGGCCG  >  NC_002947/2987115‑2987374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.