New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2987261	28 (0.480)	4 (0.070)	3/254	NT	9.9%	coding (1138/2991 nt)	PP_2612	membrane protein
	?	NC_002947	4109346 =	46 (0.810)					coding (1168/2991 nt)	PP_3616	membrane protein

ATGAAGACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAA  >  NC_002947/4109233‑4109487                                                                                                                  |                                                                                                                                              aTGAAGACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTc                                                                                                            >  7:220329/1‑149 (MQ=31)  tGAAGACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTct                                                                                                           >  8:232463/1‑149 (MQ=32)   gAAGACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctg                                                                                                          >  4:114444/1‑149 (MQ=32)      gACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctggct                                                                                                       <  6:15524/149‑1 (MQ=32)       aCTATTCCCACAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCTCTTCCTCGCCGAACGCGACGCGCTGGAACGATTGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctggctg                                                                                                      <  6:149383/149‑1 (MQ=255)        cTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctggctgg                                                                                                     <  3:363698/149‑1 (MQ=32)         tATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCtggctggc                                                                                                    >  4:203318/1‑149 (MQ=32)               cccAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGc                                                                                              <  7:282723/149‑1 (MQ=32)                ccAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGcc                                                                                             >  7:53451/1‑149 (MQ=32)                       tGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATccc                                                                                      <  8:8273/149‑1 (MQ=34)                        gcgcgcCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCa                                                                                     <  8:53451/149‑1 (MQ=34)                                ggCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACAtt                                                                              >  8:22351/1‑148 (MQ=34)                                 gcgcAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACAtt                                                                              <  2:239278/147‑1 (MQ=34)                                      gcgcCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAAcc                                                                       <  5:81281/149‑1 (MQ=34)                                                gTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCt                                                             >  2:122526/1‑149 (MQ=34)                                                   gACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGc                                                          >  6:312412/1‑149 (MQ=34)                                                    aCAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCt                                                         >  8:111898/1‑149 (MQ=34)                                                      aaaTACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGc                                                       <  4:355639/149‑1 (MQ=34)                                                      aaaTACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGc                                                       <  1:122526/149‑1 (MQ=34)                                                      aaaTACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGc                                                       >  5:352598/1‑149 (MQ=34)                                                        aTACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCgg                                                     >  5:75518/1‑149 (MQ=34)                                                        aTACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCgg                                                     <  7:23524/149‑1 (MQ=34)                                                              gcgcTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctggctgg                                                                                                     >  5:49655/1‑95 (MQ=33)                                                              gcgcTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTctggctgg                                                                                                     <  6:49655/95‑1 (MQ=33)                                                              gcgcTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTgg                                               <  7:232463/149‑1 (MQ=34)                                                               cgcTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGc                                              <  7:111898/149‑1 (MQ=34)                                                                 cTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTTCGCAACCTGGCCTTTCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCt                                            <  6:203075/149‑1 (MQ=21)                                                                    ccTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCg                                                      <  5:263804/136‑1 (MQ=34)                                                                    ccTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCg                                                      >  6:263804/1‑136 (MQ=34)                                                                     cTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTa                                        <  6:352598/149‑1 (MQ=34)                                                                       cGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTAc                                       >  4:302305/1‑148 (MQ=34)                                                                            aaCGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACcgc                                 <  1:347105/149‑1 (MQ=34)                                                                            aaCGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTCGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACcgc                                 >  5:296531/1‑149 (MQ=21)                                                                              caggttgcgcagggcggcaatccgtcgttccagcgcAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGcga                               >  7:245721‑M2/37‑149 (MQ=255)                                                                              caggttgcgcagggcggcaatccgtcgttccagcgcAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGcga                               >  7:250860‑M2/37‑149 (MQ=255)                                                                                ggttgcgcagggcggcaatccgtcgttccagcgcAACCTGGCCTTGCAAGCCAGCAACGATCATGACGCCTGGCTGGCGACGGCCGAACCCCaa                                                                                    <  1:280411‑M2/60‑1 (MQ=255)                                                                                ggttgcgcagggcggcaatccgtcgttccagcgcAACCTGGCCTTGCAAGCCAGCAACGATCATGACGCCTGGCTGGCGACGGCCGAACCCCaa                                                                                    >  2:280411‑M2/35‑94 (MQ=255)                                                                                  acgcgCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGaa                           <  8:220329/149‑1 (MQ=34)                                                                                  acgcgCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGaa                           <  7:92745/149‑1 (MQ=34)                                                                                  acgcgCTCGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGACGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGaa                           <  4:277449/149‑1 (MQ=21)                                                                                   cgcgCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAAc                          <  1:214511/149‑1 (MQ=34)                                                                                        tGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTg                                           <  2:29374/127‑1 (MQ=35)                                                                                        tGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTg                                           >  1:29374/1‑127 (MQ=35)                                                                                            acgacgGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTccg                 >  4:121642/1‑149 (MQ=34)                                                                                              gacgGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGTGGCACTGGCCTGTTACGACCGCGACGAACGCACCTccgcc               >  5:275255/1‑149 (MQ=21)                                                                                              gaaggATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGAAGGCTGGCTGGCGACTGCCGAATCCCAACACATTGATAACCCCTACAGCCTGTCTGCGTCACTg                                                <  7:39244/113‑1 (MQ=11)                                                                                               acgGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTccgccc              <  8:58229/149‑1 (MQ=34)                                                                                                    ttGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGt         <  3:114444/149‑1 (MQ=34)                                                                                                       ccgccCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACTCATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTg      <  6:148660/149‑1 (MQ=21)                                                                                                       ccgccCTGCGCAACCTGGCCTTCCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGTATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTg      <  7:49047/149‑1 (MQ=21)                                                                                                           ccTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGaaa  >  1:142502/1‑149 (MQ=34)                                                                                                                  |                                                                                                                                              ATGAAGACTATTCCCCCAATGGTGCGCGCCTGGCGCAGCGCCTCGATGTCGACAAATACCGGCGCTTCCTCGCCGAACGCGACGCGCTGGAACGACGGATTGCCGCCCTGCGCAACCTGGCCTTGCAAGCCAGCAACGATCATGACGTCTGGCTGGCGACGGCCGAATCCCAACACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAA  >  NC_002947/4109233‑4109487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.