New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3335433 = | 50 (0.850) | 3 (0.050) | 3/254 | NT | 6.0% | coding (129/1704 nt) | PP_2932 | amidase family protein |
? | NC_002947 | 3335479 = | 46 (0.810) | coding (83/1704 nt) | PP_2932 | amidase family protein |
CAGGCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGTTCACCAAAAAATG > NC_002947/3335286‑3335578 | cAGGCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTg > 4:250656/1‑148 (MQ=255) cAGGCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTg < 3:250656/148‑1 (MQ=255) gCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCCCTACGGCGTTAAGGGCAGTGGCCg > 3:219715/1‑149 (MQ=255) gCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCAGGCCCTTCGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTACAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGACg > 5:74391/1‑149 (MQ=255) cTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCgtg > 8:238310/1‑149 (MQ=255) tttGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCgtgt > 6:234837/1‑149 (MQ=255) aCCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGgc < 2:203887/149‑1 (MQ=255) cTGTCCTTGGCGGTGTAGGTGATGCCGTCCAGGGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTa < 4:109291/149‑1 (MQ=255) gTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAgg > 3:109447/1‑149 (MQ=255) tCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATTGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGc < 5:337394/149‑1 (MQ=255) tCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGc < 6:207530/149‑1 (MQ=255) tCCTTGGCGGTGTAGGGGATGCCGGCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCGTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAg < 5:177877/147‑1 (MQ=255) ttGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTc > 4:196545/1‑149 (MQ=255) ggCGGTGTAGGTGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCg < 2:30793/148‑1 (MQ=255) gCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCCCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGAt < 1:354033/149‑1 (MQ=255) ggggATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATgcgcgc > 5:319797/1‑147 (MQ=255) ggggATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGcc < 7:238310/148‑1 (MQ=255) ccGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGc < 2:299711/149‑1 (MQ=255) ccGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGc > 4:163170/1‑149 (MQ=255) cGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGcc < 3:196545/149‑1 (MQ=255) gTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCt > 8:41187/1‑149 (MQ=255) tCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACTGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCtt < 1:292550/149‑1 (MQ=255) tCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCtt < 7:41187/149‑1 (MQ=255) attttttggtgaacgcatgatcgaggtaaccgaggtttccattgccgagctgcgcgacgcgctcgagacgggccgcacaacggcggtcgagctggtcaaGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGa > 6:53496‑M1/100‑149 (MQ=255) gCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGAc > 1:26706/1‑148 (MQ=255) tttggtgaacgcatgatcgaggtaaccgaggtttccattgccgagctgcgcgacgcgctcgagacgggccgcacaacggcggtcgagctggtcaaGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGAc < 1:336401‑M1/51‑1 (MQ=255) tttggtgaacgcatgatcgaggtaaccgaggtttccattgccgagctgcgcgacgcgctcgagacgggccgcacaacggcggtcgagctggtcaaGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCa > 2:336401‑M1/96‑148 (MQ=255) gCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCt > 6:31307/1‑149 (MQ=255) tAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTc > 5:354658/1‑148 (MQ=255) tAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCg > 3:306473/1‑149 (MQ=255) ccTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGAccgcc > 2:154094/1‑149 (MQ=255) cTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGAccgccg > 5:289107/1‑149 (MQ=255) cccTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTtgt < 4:109447/149‑1 (MQ=255) cccTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTtgt < 1:21665/149‑1 (MQ=255) ccTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCATTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTtgtg > 5:260337/1‑149 (MQ=255) gcgcGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGc < 3:163170/148‑1 (MQ=255) cggGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc < 6:191063/149‑1 (MQ=255) gggCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc > 4:234011/1‑148 (MQ=255) gggCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc > 1:111731/1‑148 (MQ=255) gggCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc < 3:234011/148‑1 (MQ=255) cATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAgc < 5:31307/149‑1 (MQ=255) gAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTc > 1:150274/1‑149 (MQ=255) gCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTcgcg < 2:111731/149‑1 (MQ=255) ggCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGc < 3:127546/148‑1 (MQ=255) cttcttTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc > 4:121497/1‑130 (MQ=255) cttcttTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGtctc < 3:121497/130‑1 (MQ=255) ttcttTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCgg > 7:319858/1‑149 (MQ=255) ttCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAAt > 3:39427/1‑149 (MQ=255) gcgcCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGa > 7:256190/1‑148 (MQ=255) gcgcCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGAGGACCGTCTCGAGCGCGTCGCGCAGATCGGCAATGGa > 8:146249/1‑148 (MQ=255) ccGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCg > 1:104411/1‑149 (MQ=255) accacTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGAt > 1:254639/1‑149 (MQ=255) accacTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGAt < 1:154094/149‑1 (MQ=255) cGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCg < 2:26706/148‑1 (MQ=255) cGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGt > 7:156331/1‑149 (MQ=255) cattAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGTTCa < 6:260337/147‑1 (MQ=255) ttAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGTTCAc > 2:50265/1‑148 (MQ=255) aGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCTGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGTTCACCAAAAAAtg < 5:234837/149‑1 (MQ=255) | CAGGCCTTTGACCAGGTAGCTGTCCTTGGCGGTGTAGGGGATGCCGTCCAGCGGGCTAAGCACCTGGCCCTTGGCGCGGCGGGCATCGGAGGCCTCGGCTTCTTTCAGCGCCTCCGGGTTGCGCACCACTACGGCGTTAAGGGCAGTGGCCGTGTCGGCGCCATCGTAGGCGTCGATGCGCGCCAGGTAGGCCTTGACCAGCTCGACCGCCGTTGTGCGGCCCGTCTCGAGCGCGTCGCGCAGCTCGGCAATGGAAACCTCGGTTACCTCGATCATGCGTTCACCAAAAAATG > NC_002947/3335286‑3335578 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |