New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3444269 =	41 (0.700)	4 (0.070)	4/246	NT	9.1%	coding (3028/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3444330 =	41 (0.740)					coding (3089/3270 nt)	PP_3062	tail length determination protein

CCGGCGTCGAAAGATCCGTTCCTGTTGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAA  >  NC_002947/3444122‑3444411                                                                                                                                                    |                                                                                                                                               ccGGCGTCGAAAGATCCGTTCCTGTTGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATc                                                                                                                                               <  7:203626/149‑1 (MQ=255) acgtgcgcgcagccacctcgcgctgccaggcgtcaaacagcccgcgcataccgtttgccatttcgttcagcaattggtttgggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTc                                                                                                                                               >  1:81043‑M1/148‑149 (MQ=255)     gcgcgcagccacctcgcgctgccaggcgtcaaacagcccgcgcataccgtttgccatttcgttcagcaattggtttgggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGgcg                                                                                                                                           <  3:29841‑M1/6‑1 (MQ=255)                 ctcgcgctgccaggcgtcaaacagcccgcgcataccgtttgccatttcgttcagcaattggtttgggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCg                                                                                                                               <  8:315477‑M1/18‑1 (MQ=255)                     cttGTTGGCCGTCATGGCGGGCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGgc                                                                                                                                            >  6:269165/3‑132 (MQ=255)                     cttGTTGGCCGTCATGGCGGGCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGgc                                                                                                                                            <  5:269165/130‑1 (MQ=255)                        gTTGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTgc                                                                                                                        >  2:19600/1‑149 (MQ=255)                         ttGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTgcc                                                                                                                       <  3:304204/149‑1 (MQ=255)                         ttGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGACCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTgcc                                                                                                                       >  8:301885/1‑149 (MQ=255)                           gCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTgccgc                                                                                                                     >  3:57879/1‑149 (MQ=255)                                     aCGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTaa                                                                                                           <  2:266374/149‑1 (MQ=255)                                     aCGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTaa                                                                                                           <  4:57879/149‑1 (MQ=255)                                     aCGGCCAACAAGGTGCGGTGCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGGGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTaa                                                                                                           <  4:307880/149‑1 (MQ=255)                                          caacaaGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCt                                                                                                      >  4:365815/1‑149 (MQ=255)                                              aaGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCAcc                                                                                                  <  5:41228/149‑1 (MQ=255)                                              aaGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCAcc                                                                                                  <  3:43054/149‑1 (MQ=255)                                                          ccAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGc                                                                                                              >  6:122872/1‑125 (MQ=255)                                                          ccAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGc                                                                                                              <  5:122872/125‑1 (MQ=255)                                                          ccAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGgcgc                                                                                       <  3:64423/148‑1 (MQ=255)                                                              gcgcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                  >  7:271503/1‑149 (MQ=255)                                                                gcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGt                                                                                >  7:161009/1‑149 (MQ=255)                                                                gcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGt                                                                                <  8:271503/149‑1 (MQ=255)                                                                 gttcagcaattggtttgggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTg                                                                               >  7:315477‑M1/84‑149 (MQ=255)                                                                    aCCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGac                                                                            <  8:290137/149‑1 (MQ=255)                                                                      cTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGacaa                                                                          <  7:218264/149‑1 (MQ=255)                                                                      cTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGacaa                                                                          >  3:102380/1‑149 (MQ=255)                                                                          tgCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAacac                                                                       <  1:19600/148‑1 (MQ=255)                                                                               ccACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattca                                                                  >  4:152721/1‑148 (MQ=255)                                                                               ccACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattca                                                                  >  5:366725/1‑148 (MQ=255)                                                                                 acaGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattcacat                                                               >  3:150064/1‑149 (MQ=255)                                                                                  ggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                  >  7:49390‑M1/67‑129 (MQ=255)                                                                                  ggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                  <  8:49390‑M1/63‑1 (MQ=255)                                                                                         aaCCCGAGCCCCCGGCCGTACTGGGGGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCg                                                       <  2:188773/149‑1 (MQ=255)                                                                                         aaCCCGAGCCACCGGCCGTACTGGGAGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGACGCCGAAGGTGGACACCACATTCACATTCGCCCCg                                                       >  2:329752/1‑149 (MQ=255)                                                                                           cccGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGt                                                     <  4:150064/149‑1 (MQ=255)                                                                                            ccGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGt                                                     >  2:65534/1‑148 (MQ=255)                                                                                              gAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTAt                                                  <  4:102380/149‑1 (MQ=255)                                                                                                    ccGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCAc                                                                                             >  2:122832/1‑100 (MQ=255)                                                                                                              tGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGtt                                                    >  6:370509/1‑131 (MQ=255)                                                                                                              tGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGtt                                                    <  5:370509/131‑1 (MQ=255)                                                                                                                     tgtgGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCGGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATCGCGATg                           >  5:333551/1‑149 (MQ=255)                                                                                                                          tgCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTaaa                      <  6:366725/149‑1 (MQ=255)                                                                                                                                  aTGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCaaa              <  3:152721/149‑1 (MQ=255)                                                                                                                                      ccAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGc                               <  7:116016/128‑1 (MQ=255)                                                                                                                                      ccAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGc                               >  8:116016/1‑128 (MQ=255)                                                                                                                                       cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt         >  2:33301/1‑149 (MQ=255)                                                                                                                                       cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt         >  7:241095/1‑149 (MQ=255)                                                                                                                                       cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt         >  5:111263/1‑149 (MQ=255)                                                                                                                                             cgcgCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGa   <  3:365815/149‑1 (MQ=255)                                                                                                                                              gcgcCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGaa  <  6:111263/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               CCGGCGTCGAAAGATCCGTTCCTGTTGCCCGCCATGACGGCCAACAAGGTGCGGTTCCCAGGCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAA  >  NC_002947/3444122‑3444411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.