New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3444269 =	41 (0.700)	4 (0.070)	4/246	NT	9.1%	coding (3028/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3444330 =	41 (0.740)					coding (3089/3270 nt)	PP_3062	tail length determination protein

GCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGT  >  NC_002947/3444183‑3444476                                                                                                                                                    |                                                                                                                                                   gcgcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                                                                                   >  7:271503/1‑149 (MQ=255)   gcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGt                                                                                                                                                 >  7:161009/1‑149 (MQ=255)   gcCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGt                                                                                                                                                 <  8:271503/149‑1 (MQ=255)    gttcagcaattggtttgggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTg                                                                                                                                                >  7:315477‑M1/84‑149 (MQ=255)       aCCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGac                                                                                                                                             <  8:290137/149‑1 (MQ=255)         cTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGacaa                                                                                                                                           <  7:218264/149‑1 (MQ=255)         cTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGacaa                                                                                                                                           >  3:102380/1‑149 (MQ=255)             tgCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAacac                                                                                                                                        <  1:19600/148‑1 (MQ=255)                  ccACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattca                                                                                                                                   >  5:366725/1‑148 (MQ=255)                  ccACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattca                                                                                                                                   >  4:152721/1‑148 (MQ=255)                    acaGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAAcacattcacat                                                                                                                                >  3:150064/1‑149 (MQ=255)                     ggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                                                                                   >  7:49390‑M1/67‑129 (MQ=255)                     ggtctttaacatcgccatggacagtgagcggcataaccggggcgaatgtgaatgtgttgtccacctTCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAg                                                                                                                                                   <  8:49390‑M1/63‑1 (MQ=255)                            aaCCCGAGCCCCCGGCCGTACTGGGGGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCg                                                                                                                        <  2:188773/149‑1 (MQ=255)                            aaCCCGAGCCACCGGCCGTACTGGGAGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGACGCCGAAGGTGGACACCACATTCACATTCGCCCCg                                                                                                                        >  2:329752/1‑149 (MQ=255)                              cccGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGt                                                                                                                      <  4:150064/149‑1 (MQ=255)                               ccGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGt                                                                                                                      >  2:65534/1‑148 (MQ=255)                                 gAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTAt                                                                                                                   <  4:102380/149‑1 (MQ=255)                                                 tGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGtt                                                                                                                     >  6:370509/1‑131 (MQ=255)                                                 tGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGtt                                                                                                                     <  5:370509/131‑1 (MQ=255)                                                        tgtgGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCGGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATCGCGATg                                                                                            >  5:333551/1‑149 (MQ=255)                                                             tgCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTaaa                                                                                       <  6:366725/149‑1 (MQ=255)                                                                     aTGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCaaa                                                                               <  3:152721/149‑1 (MQ=255)                                                                         ccAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGc                                                                                                >  8:116016/1‑128 (MQ=255)                                                                         ccAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGc                                                                                                <  7:116016/128‑1 (MQ=255)                                                                          cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt                                                                          >  7:241095/1‑149 (MQ=255)                                                                          cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt                                                                          >  5:111263/1‑149 (MQ=255)                                                                          cAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAAt                                                                          >  2:33301/1‑149 (MQ=255)                                                                                cgcgCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGa                                                                    <  3:365815/149‑1 (MQ=255)                                                                                 gcgcCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGaa                                                                   <  6:111263/149‑1 (MQ=255)                                                                                  caccttcggcgccggtggcggtgaggccttagcaggtggcggcacctccggcagcttgggcgccgaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAAc                                                                  >  7:315477‑M2/67‑149 (MQ=255)                                                                                     cttcggcgccggtggcggtgaggccttagcaggtggcggcacctccggcagcttgggcgccgaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGAcc                                                                                   <  8:49390‑M2/66‑1 (MQ=255)                                                                                     cttcggcgccggtggcggtgaggccttagcaggtggcggcacctccggcagcttgggcgccgaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGAcc                                                                                   >  7:49390‑M2/64‑129 (MQ=255)                                                                                         GGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATg                                                            >  8:161009‑M1/1‑148 (MQ=255)                                                                                          GCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATgg                                                           <  1:64527‑M1/148‑1 (MQ=255)                                                                                               cAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACg                                                     >  3:166628/1‑149 (MQ=255)                                                                                                  gCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTa                                                  >  7:297212/1‑149 (MQ=255)                                                                                                   cTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAATCCAATTGCTGAACGAAATGGCAAACGGTAt                                                 <  1:33301/149‑1 (MQ=255)                                                                                                      ccGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATgcg                                              >  5:79907/1‑149 (MQ=255)                                                                                                       cGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATgcgc                                             <  2:64527/149‑1 (MQ=255)                                                                                                         gAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCgg                                           <  8:241095/149‑1 (MQ=255)                                                                                                            gTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCt                                        >  6:275102/1‑149 (MQ=255)                                                                                                              gccgccACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGt                                      >  4:29841/1‑149 (MQ=255)                                                                                                               ccgcgACCTGCTAAGGCCTCACGGCCACCGGCGCCGAAGGTGGACAAATCATTCACATTCGCCCCTGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGGTGATCGAAATGGCAAACGGTATGCGCGGGCTGtt                                     <  6:333551/149‑1 (MQ=255)                                                                                                               ccgccACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGc                                                          >  1:282089/1‑128 (MQ=255)                                                                                                               ccgccACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGc                                                          <  2:282089/128‑1 (MQ=255)                                                                                                                cgccACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGttt                                    <  6:79907/149‑1 (MQ=255)                                                                                                                 gccACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTg                                   <  1:65534/149‑1 (MQ=255)                                                                                                                             ggCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAgc                       <  3:363070/149‑1 (MQ=255)                                                                                                                               ccTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAacgc                     <  8:297212/149‑1 (MQ=255)                                                                                                                                cTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAgcgc                     >  7:220315/1‑148 (MQ=255)                                                                                                                                 tCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCTTGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAgcgc                     >  4:257363/1‑147 (MQ=255)                                                                                                                                  cggcagcttgggcgccgaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAg                  <  8:315477‑M2/131‑1 (MQ=255)                                                                                                                                              cgccgaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTgcgcgc      <  3:29841‑M2/143‑1 (MQ=255)                                                                                                                                                  gaAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGt  >  1:81043‑M2/3‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCGCCGACCTTGTGCGGCCACAGCCTCAACCCGAGCCACCGGCCGTACTGGGTGATGTGGTGCGCGAGATGGCCAAGGCCGCGCCATCGGCGCCCAAGCTGCCGGAGGTGCCGCCACCTGCTAAGGCCTCACCGCCACCGGCGCCGAAGGTGGACAACACATTCACATTCGCCCCGGTTATGCCGCTCACTGTCCATGGCGATGTTAAAGACCCAAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGT  >  NC_002947/3444183‑3444476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.