New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3567752 = | 42 (0.710) | 4 (0.070) | 4/244 | NT | 9.1% | coding (309/1998 nt) | PP_3150 | hypothetical protein |
? | NC_002947 | 3567805 = | 41 (0.750) | coding (362/1998 nt) | PP_3150 | hypothetical protein |
CCAGTGTTGTCGATGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGT > NC_002947/3567607‑3567900 | ccAGTGTTGTCGATGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAg > 2:291058/1‑149 (MQ=255) ccAGTGTTGTCGATGCCGCTACCGTTATGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCCTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAg > 8:78814/1‑149 (MQ=255) aggtacaccgggtgcagcggcgtggcccgttggcggtagcggtcggcgaactggaagttccactggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcctgccccc < 4:329396‑M1/4‑3 (MQ=255) aTGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAgg > 5:184444/1‑138 (MQ=255) aTGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAgg < 6:184444/138‑1 (MQ=255) aTGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGca > 8:20403/1‑149 (MQ=255) ccGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCCACGCGCAGGAGCGTCGTATCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGACGCCCCCGGGCGCTTCCAGGCCCACGTAGCACACCAATTc > 6:27571/1‑149 (MQ=255) cGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTc > 5:289173/1‑148 (MQ=255) cGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTc > 5:186720/1‑148 (MQ=255) gCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGt > 2:36773/1‑149 (MQ=255) aaaCCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCg > 2:349159/1‑149 (MQ=255) ggtcggcgaactggaagttccactggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCa < 5:359987‑M1/44‑1 (MQ=255) tGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATg > 6:29943/1‑149 (MQ=255) ccAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCGCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCTCGAAGCGTTCGCCATGGGCCTgg < 7:340454/149‑1 (MQ=255) gaagttccactggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCAt > 6:359987‑M1/93‑149 (MQ=255) ccACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTg < 7:20403/149‑1 (MQ=255) ccacGCTTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTTTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTgg < 3:329396/146‑1 (MQ=255) cACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCt > 7:55984/1‑138 (MQ=255) cACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCt < 8:55984/138‑1 (MQ=255) aCCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTggg > 5:363066/1‑149 (MQ=255) actggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGc > 5:107372‑M1/85‑139 (MQ=255) actggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGc < 6:107372‑M1/55‑1 (MQ=255) ccGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCAAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACgg > 8:216802/1‑148 (MQ=255) cGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCTCATCGCCAACGAAGTCGAAGGTGTCGCCGCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCa < 5:27571/149‑1 (MQ=255) gACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCAt < 6:186720/149‑1 (MQ=255) cgcAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCGCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGATGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa < 5:377054/149‑1 (MQ=255) cAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAg < 1:355222/87‑1 (MQ=255) cAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAg > 2:355222/1‑87 (MQ=255) aGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCActg < 5:29943/149‑1 (MQ=255) gAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCActgct > 1:213060/1‑149 (MQ=255) gCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑t > 5:146834/1‑149 (MQ=255) cgtcgtTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGTTCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑Tc < 1:291058/149‑1 (MQ=255) tttCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGcc > 8:31608/1‑148 (MQ=255) ccGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTg > 7:175910/1‑149 (MQ=255) ccGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACCGCTG‑TCGGCCGAAGTg < 6:363066/149‑1 (MQ=255) cGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTg < 8:44175/128‑1 (MQ=255) cGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTg > 7:44175/1‑128 (MQ=255) cGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTAc > 3:184796/1‑148 (MQ=255) gTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa > 6:283855/1‑123 (MQ=255) gTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa < 5:283855/123‑1 (MQ=255) cgcATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGc < 1:349159/149‑1 (MQ=255) tCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGAc < 1:36773/149‑1 (MQ=255) ccAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGCGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGa > 7:11781/1‑148 (MQ=255) aCGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCgg < 4:361968/120‑1 (MQ=255) aCGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCgg > 3:361968/1‑120 (MQ=255) gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGa > 2:101987/1‑149 (MQ=255) gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑GCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGagtc > 8:309224/1‑146 (MQ=255) gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCAATTCAG‑TAGGACGAAGTGCAGTACCATGCGGAAGAATGTCGGGATg > 8:304138/1‑148 (MQ=255) tCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGc < 7:216802/149‑1 (MQ=255) cGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGc > 2:292254/1‑148 (MQ=255) ggCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTGATCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGaa < 1:101987/149‑1 (MQ=255) gcTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTc < 4:184796/149‑1 (MQ=255) ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGaa > 7:293154/1‑96 (MQ=255) ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGaa < 8:293154/96‑1 (MQ=255) ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTc > 1:51303/1‑147 (MQ=255) CCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGt < 6:41008‑M1/149‑1 (MQ=255) | CCAGTGTTGTCGATGCCGCTACCGTTCTGTTCGTGCAAAACCTGCCACGCCAGCCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGT > NC_002947/3567607‑3567900 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |