New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3567752 =	42 (0.710)	4 (0.070)	4/244	NT	9.1%	coding (309/1998 nt)	PP_3150	hypothetical protein
	?	NC_002947	3567805 =	41 (0.750)					coding (362/1998 nt)	PP_3150	hypothetical protein

CCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCACGCCGCTGCACCCGGTGTACCT  >  NC_002947/3567660‑3567949                                                                                                                                                  |                                                                                                                                                  gaagttccactggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCAt                                                                                                                                                >  6:359987‑M1/93‑149 (MQ=255)     ccACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTg                                                                                                                                            <  7:20403/149‑1 (MQ=255)      ccacGCTTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTTTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTgg                                                                                                                                           <  3:329396/146‑1 (MQ=255)       aCCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTggg                                                                                                                                          >  5:363066/1‑149 (MQ=255)         actggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGc                                                                                                                                                  <  6:107372‑M1/55‑1 (MQ=255)         actggccttcgtcatccagccattcgtccgcctggtactgcacttcggccgacagcagtgcaatgccgttttcgcccagcatgcCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGc                                                                                                                                                  >  5:107372‑M1/85‑139 (MQ=255)                 ccGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCAAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACgg                                                                                                                                 >  8:216802/1‑148 (MQ=255)                  cGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCTCATCGCCAACGAAGTCGAAGGTGTCGCCGCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCa                                                                                                                               <  5:27571/149‑1 (MQ=255)                   gACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCAt                                                                                                                              <  6:186720/149‑1 (MQ=255)                       cgcAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCGCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGATGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa                                                                                                                          <  5:377054/149‑1 (MQ=255)                          aGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCActg                                                                                                                       <  5:29943/149‑1 (MQ=255)                            gAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCActgct                                                                                                                     >  1:213060/1‑149 (MQ=255)                              gCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑t                                                                                                                  >  5:146834/1‑149 (MQ=255)                               cgtcgtTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGTTCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑Tc                                                                                                                 <  1:291058/149‑1 (MQ=255)                                    tttCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGcc                                                                                                             >  8:31608/1‑148 (MQ=255)                                         ccGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTg                                                                                                       >  7:175910/1‑149 (MQ=255)                                         ccGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACCGCTG‑TCGGCCGAAGTg                                                                                                       <  6:363066/149‑1 (MQ=255)                                          cGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTg                                                                                                                            <  8:44175/128‑1 (MQ=255)                                          cGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTg                                                                                                                            >  7:44175/1‑128 (MQ=255)                                                cGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTAc                                                                                                 >  3:184796/1‑148 (MQ=255)                                                 gTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa                                                                                                                          <  5:283855/123‑1 (MQ=255)                                                 gTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCa                                                                                                                          >  6:283855/1‑123 (MQ=255)                                                    cgcATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGc                                                                                            <  1:349159/149‑1 (MQ=255)                                                        tCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGAc                                                                                        <  1:36773/149‑1 (MQ=255)                                                           ccAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGCGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGa                                                                                      >  7:11781/1‑148 (MQ=255)                                                              aCGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCgg                                                                                                               <  4:361968/120‑1 (MQ=255)                                                              aCGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCgg                                                                                                               >  3:361968/1‑120 (MQ=255)                                                                      gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGa                                                                          >  2:101987/1‑149 (MQ=255)                                                                      gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑GCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGagtc                                                                          >  8:309224/1‑146 (MQ=255)                                                                      gAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCAATTCAG‑TAGGACGAAGTGCAGTACCATGCGGAAGAATGTCGGGATg                                                                           >  8:304138/1‑148 (MQ=255)                                                                             tCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGc                                                                   <  7:216802/149‑1 (MQ=255)                                                                              cGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGc                                                                   >  2:292254/1‑148 (MQ=255)                                                                                      ggCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTGATCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGaa                                                           <  1:101987/149‑1 (MQ=255)                                                                                         gcTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTc                                                       <  4:184796/149‑1 (MQ=255)                                                                                         atgcccaggcccatggcgaacgcttcgcgatcgaattgctgtgctacctgggcctggGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTc                                                       >  6:359987‑M2/58‑149 (MQ=255)                                                                                           ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGaa                                                                                                          <  8:293154/96‑1 (MQ=255)                                                                                           ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGaa                                                                                                          >  7:293154/1‑96 (MQ=255)                                                                                           ttCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTc                                                       >  1:51303/1‑147 (MQ=255)                                                                                           gcccaggcccatggcgaacgcttcgcgatcgaattgctgtgctacctgggcctggGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGt                                                               >  5:107372‑M2/56‑139 (MQ=255)                                                                                           gcccaggcccatggcgaacgcttcgcgatcgaattgctgtgctacctgggcctggGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGt                                                               <  6:107372‑M2/84‑1 (MQ=255)                                                                                             CCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGt                                                   <  6:41008‑M1/149‑1 (MQ=255)                                                                                                GGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACTAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCg                                                >  8:175910‑M1/1‑149 (MQ=255)                                                                                                GGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCg                                                >  7:78814‑M1/1‑149 (MQ=255)                                                                                                    CAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGa                                            <  7:253893‑M1/149‑1 (MQ=255)                                                                                                      tggcgaacgcttcgcgatcgaattgctgtgctacctgggcctggGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGAcc                                          <  5:359987‑M2/105‑1 (MQ=255)                                                                                                              aGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTc                                                 <  6:118699/134‑1 (MQ=255)                                                                                                              aGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTc                                                 >  5:118699/1‑134 (MQ=255)                                                                                                                           cgAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCAcgc                     >  6:40166/1‑149 (MQ=255)                                                                                                                             aaGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCaa                               >  3:185037/1‑137 (MQ=255)                                                                                                                             aaGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCaa                               <  4:185037/137‑1 (MQ=255)                                                                                                                              aGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCAcgccgc                  <  2:213060/149‑1 (MQ=255)                                                                                                                                 gTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCACGCCGCTGc               >  5:118597/1‑149 (MQ=255)                                                                                                                                      ccATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCACGCCGCTGCACCCg          <  8:253893/149‑1 (MQ=255)                                                                                                                                       cATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGc                          <  1:95161/132‑1 (MQ=255)                                                                                                                                       cATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGc                          >  2:95161/1‑132 (MQ=255)                                                                                                                                              ggggGCAGGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCACGCCGCTGCACCCGGTGTACCt  <  4:329396‑M2/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCTGCCACCGCCTCGGCCGACGCGCAGGAGCGTCGTTTCGCCGAAATCGTGCGCATCGCCAACGAAGTCGAAGGTGTCGCCCCCGGGCGCTTCCAGGCCCAGGTAGCACAGCAATTCGATCGCGAAGCGTTCGCCATGGGCCTGGGCATGCTGGGCGAAAACGGCATTGCACTGCTG‑TCGGCCGAAGTGCAGTACCAGGCGGACGAATGGCTGGATGACGAAGGCCAGTGGAACTTCCAGTTCGCCGACCGCTACCGCCAACGGGCCACGCCGCTGCACCCGGTGTACCT  >  NC_002947/3567660‑3567949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.