New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4207063 =	46 (0.780)	4 (0.070)	4/250	NT	9.3%	coding (713/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	4207100 =	34 (0.610)					coding (676/6624 nt)	PP_3691	DNA helicase‑related protein

CGTAACATCATCGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGCTT  >  NC_002947/4206918‑4207205                                                                                                                                                    |                                                                                                                                                gtgaactgtcctcatcgctggatggttacgagggtggcgcgaagcgagcttggcaactcgcgtctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagtcaggtcaaaaggtgcGt                                                                                                                                                >  6:369763‑M1/148‑149 (MQ=255) cgTAACATCATCGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAg                                                                                                                                              >  6:173260/1‑149 (MQ=255)    aactgtcctcatcgctggatggttacgagggtggcgcgaagcgagcttggcaactcgcgtctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagtcaggtcaaaaggtgcGTAg                                                                                                                                              >  2:370185‑M1/145‑148 (MQ=255)       atcatcGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAAc                                                                                                                                        <  8:334622/149‑1 (MQ=255)        tcatcGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCATAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAGCCAGGGTGAGATCCATGCAGGTAGCCAAAc                                                                                                                                        <  1:209888/149‑1 (MQ=255)          atcGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAg                                                                                                                                     >  1:227406/1‑149 (MQ=255)          atcGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAg                                                                                                                                     <  7:190718/149‑1 (MQ=255)               ttAGAGCACTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCa                                                                                                                               <  6:268074/149‑1 (MQ=255)                 agagCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAg                                                                                                                              >  2:362394/1‑148 (MQ=255)                  gagCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGc                                                                                                                             >  1:315247/1‑148 (MQ=255)                   agCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCaa                                                                                                                           >  2:213265/1‑149 (MQ=255)                      aGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCt                                                                                                                        <  2:227406/149‑1 (MQ=255)                             aaCTCCTCTGCCTTCATCCACTCTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGAAC‑GGGTTGAGCCCTATTTGCTACAGGTCAGCGCAGAACAG‑CAGTGTGAGATCCATGCAGGTAGCAAAAGCAGTA‑TCAGCAATCTGGCTTg                                                                                                                  <  8:315426/148‑1 (MQ=255)                             aaCTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTg                                                                                                                  <  1:362394/148‑1 (MQ=255)                             aaCTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTg                                                                                                                  <  7:39703/148‑1 (MQ=255)                              aCTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTggg                                                                                                                <  2:315247/149‑1 (MQ=255)                                     tGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGt                                                                                                                                    >  4:10752/1‑123 (MQ=255)                                     tGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGt                                                                                                                                    <  3:10752/123‑1 (MQ=255)                                        cgaagcgagcttggcaactcgcgtctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagtcaggtcaaaaggtgcGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCAc                                                                                                        >  3:6140‑M1/109‑149 (MQ=255)                                               cacaGGCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGa                                                                                                 <  2:237849/147‑1 (MQ=255)                                                   gTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAg                                                                                                                              >  1:353184/1‑114 (MQ=255)                                                   gTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAg                                                                                                                              <  2:353184/114‑1 (MQ=255)                                                    aactcgcgtctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagcagggtgagatccatgcagGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGa                                                                                            >  4:25890‑M1/97‑149 (MQ=255)                                                       tGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGtt                                                                                       >  8:166461/1‑149 (MQ=255)                                                         cGAAAGCGTGACCGCGAGTGAATACGATGACCGGGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGtt                                                                                       >  1:50375/1‑148 (MQ=255)                                                           aaaGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCaaa                                                                                   <  3:316826/149‑1 (MQ=255)                                                               tctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagtcaggtcaaaaggtgcGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGc                                                                                                          <  1:3520‑M1/39‑1 (MQ=255)                                                               tctgcggtttggagcgccgtcgcacggatgaagctcgactatgcattgccgccagccagctttgaacagtcaggtcaaaaggtgcGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGc                                                                                                          >  2:3520‑M1/86‑124 (MQ=255)                                                                                 cGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATa                                                              <  1:213265/148‑1 (MQ=255)                                                                                 cGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATa                                                              <  4:347146/148‑1 (MQ=255)                                                                                  gATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCATCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAg                                                                                  <  6:200328/127‑1 (MQ=255)                                                                                  gATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAg                                                                                  >  5:200328/1‑127 (MQ=255)                                                                                  gATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAAt                                                                   >  8:152245/1‑142 (MQ=255)                                                                                  gATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAAt                                                                   <  7:152245/142‑1 (MQ=255)                                                                                        c‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCt                                                      >  6:369374/1‑149 (MQ=255)                                                                                                 gCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGt                                              >  4:19628/1‑149 (MQ=255)                                                                                                            tCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCt                                   >  3:345666/1‑149 (MQ=255)                                                                                                              cAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAATCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCt                                   <  5:173260/147‑1 (MQ=255)                                                                                                              cAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATcc                                                >  8:79068/1‑134 (MQ=255)                                                                                                              cAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATcc                                                <  7:79068/134‑1 (MQ=255)                                                                                                                       gcAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCg                           >  3:92054/1‑146 (MQ=255)                                                                                                                                 cagGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGtt               >  3:295778/1‑149 (MQ=255)                                                                                                                                   gggTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGc             >  8:162843/1‑149 (MQ=255)                                                                                                                                      tGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGcc            >  7:321335/1‑147 (MQ=255)                                                                                                                                         gaTCCATGCAGGTAGCCAAACCAGTAGTCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGc        >  1:3584/1‑149 (MQ=255)                                                                                                                                         gaTCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTTACCTGACTGTTCAAAGCTGGCTGGCGGCAATGAATAGTCGAGCTTCATCCGTGCGAAGGCGCTCCAAACCGCAGAAGCGAGTTGCCAAGCt       >  4:362353/1‑149 (MQ=255)                                                                                                                                         gaTCAATGCAGGTAGCCAAACGAGTA‑TCAGCAATCTGGCTTGGGCTACCCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGAGGCAATGCATAGTCGAGCTTCATCAGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCt       >  4:356745/1‑149 (MQ=255)                                                                                                                                          aTCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTc                                  <  7:212775/121‑1 (MQ=255)                                                                                                                                          aTCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTc                                  >  8:212775/1‑121 (MQ=255)                                                                                                                                             cATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGc    <  7:162843/148‑1 (MQ=255)                                                                                                                                             cATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGCt   >  3:107686/1‑149 (MQ=255)                                                                                                                                              aTGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGCtt  >  6:302174/1‑149 (MQ=255)                                                                                                                                              aTGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGCtt  <  5:302174/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CGTAACATCATCGATTAGAGCAGTCGTGAACTCCTCTGCCTTCATCCACAGTCCTGCGAAAGCGTGACCGCGAGTGAATACGATGACC‑GGGTTGAGCCCGATTTGCTCCAGGGCAGCGCAGAACAG‑CAGGGTGAGATCCATGCAGGTAGCCAAACCAGTA‑TCAGCAATCTGGCTTGGGCTACGCACCTTTTGACCTGACTGTTCAAAGCTGGCTGGCGGCAATGCATAGTCGAGCTTCATCCGTGCGACGGCGCTCCAAACCGCAGACGCGAGTTGCCAAGCTCGCTT  >  NC_002947/4206918‑4207205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.