New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4350267 =	39 (0.660)	5 (0.090)	4/248	NT	10.9%	coding (833/915 nt)	PP_3822	cytochrome c family protein
	?	NC_002947	4350307 =	45 (0.810)					coding (793/915 nt)	PP_3822	cytochrome c family protein

AAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTTGATGAACGACGC  >  NC_002947/4350119‑4350412                                                                                                                                                     |                                                                                                                                                  aaaTCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCACCGACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCATACCATACAGGTTAACCCCATCATAGGCATGAAACTTCa                                                                                                                                                   >  7:63943/1‑149 (MQ=255)   ctacaactggggggctggcatgcaccgcatcaataccgcggcgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggAcc                                                                                                                                                 <  2:30082‑M1/3‑1 (MQ=255)         gTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGtc                                                                                                                                           <  4:172030/149‑1 (MQ=255)             cGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCTGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGtcttct                                                                                                                                       >  2:271745/1‑149 (MQ=255)                    ggcCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGCTCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGACCCTTCCCCCGCGTCTTCTCGATGGa                                                                                                                                >  3:352224/1‑149 (MQ=255)                        tctTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATccc                                                                                                                            >  2:34630/1‑149 (MQ=255)                          accgcatcaataccgcggcgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggACCAGCGTCTTCTCGATGGATCCctc                                                                                                                          <  5:194888‑M1/26‑1 (MQ=255)                            cGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCctc                                                                                                                          <  2:70130/147‑1 (MQ=255)                                       cgcggcgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCggg                                                                                                             <  6:61379‑M1/39‑1 (MQ=255)                                           gcgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCt                                                                                                         >  5:61379‑M1/107‑149 (MQ=255)                                           gcgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCt                                                                                                         >  6:194888‑M1/107‑149 (MQ=255)                                            cgtcgttcatcaagtacaacatgccgctgggcaagccgggcagcctcagcgatcagcaggcctgggacgtggcggcgtggatcaaccgccacgagcggccacaggACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCtg                                                                                                        >  4:240460‑M1/106‑149 (MQ=255)                                              agagGACGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACATGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGTATCCCTCTACCAACCGCGGGTCCtgtg                                                                                                      <  7:243861/149‑1 (MQ=255)                                                  gccgccACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCctct                                                                                                                         <  3:229158/126‑1 (MQ=255)                                                  gccgccACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCctct                                                                                                                         >  4:229158/1‑126 (MQ=255)                                                   ccgccACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGc                                                                                                 <  8:132067/149‑1 (MQ=255)                                                   ccgccACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGc                                                                                                 >  8:272178/1‑149 (MQ=255)                                                     gccACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTc                                                                                               >  5:254181/1‑149 (MQ=255)                                                            gCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCgg                                                                                        >  3:107969/1‑149 (MQ=255)                                                             cTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACGCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGt                                                                                       <  7:37362/149‑1 (MQ=255)                                                              ttACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGtt                                                                                      >  7:192583/1‑149 (MQ=255)                                                               tACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGtt                                                                                      >  8:22541/1‑148 (MQ=255)                                                                 ccTCAGCTACCCGTCCCTTGTCTGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGTTGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGa                                                                                    <  1:271745/148‑1 (MQ=255)                                                                 ccTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGa                                                                                    <  7:48460/148‑1 (MQ=255)                                                                 ccTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGAt                                                                                   <  8:192583/149‑1 (MQ=255)                                                                 ccTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGAt                                                                                   <  7:247405/149‑1 (MQ=255)                                                                         aCCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATGATTGGCATGAAACTTCACGCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCg                                                                                         <  5:108083/135‑1 (MQ=255)                                                                         aCCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCg                                                                                         >  6:108083/1‑135 (MQ=255)                                                                           ccGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGAt                                                                                   >  6:123893/1‑139 (MQ=255)                                                                           ccGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGAt                                                                                   <  5:123893/139‑1 (MQ=255)                                                                             gTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTg                                                                                            <  5:140060/128‑1 (MQ=255)                                                                             gTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTg                                                                                            >  6:140060/1‑128 (MQ=255)                                                                                     tCCGATCATCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCTCCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCGGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAg                                                                <  5:20463/148‑1 (MQ=255)                                                                                       cGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGTCGGTTGATCCACGCCGCCACGTCCCAGGcc                                                             <  1:34630/149‑1 (MQ=255)                                                                                          tCAGCACGCCATGAACCTGGTTACGATACAGGTTAAGCCCATCTTTGGCATGTAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCATCCGGGGGTCCTGTGGGCGCTCGTGGCGGTTGATCCACGCCGCGACGTCCGAGGCctg                                                           <  8:63943/148‑1 (MQ=255)                                                                                                ccccATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCg                                                    <  7:272178/149‑1 (MQ=255)                                                                                                 cccATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGc                                                   >  5:96305/1‑149 (MQ=255)                                                                                                 cccATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGc                                                   >  1:124954/1‑149 (MQ=255)                                                                                                       aaCCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGc                                             <  4:107969/149‑1 (MQ=255)                                                                                                         ccTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCTGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGACACGTCCCAGGCCTGCTGATCGCTGAGGCTg                                           >  3:191586/1‑149 (MQ=255)                                                                                                                   aTACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCTCGGCTTGc                                 <  2:124954/149‑1 (MQ=255)                                                                                                                       aGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCgg                                      <  7:291800/140‑1 (MQ=255)                                                                                                                       aGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCgg                                      >  8:291800/1‑140 (MQ=255)                                                                                                                            aaCCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGc                         <  7:22541/148‑1 (MQ=255)                                                                                                                            aaCCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGc                         <  6:254181/148‑1 (MQ=255)                                                                                                                                              aaaCTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCCCGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGCCTTGCCCAGCGCCAGGTTGTACTTGATGAac       >  5:167676/1‑148 (MQ=255)                                                                                                                                                 cTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTTGATGAacgacg   >  3:19257/1‑149 (MQ=255)                                                                                                                                                  ttCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTtgat           >  6:192424/1‑140 (MQ=255)                                                                                                                                                  ttCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTtgat           <  5:192424/140‑1 (MQ=255)                                                                                                                                                  ttCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTTGATGAACGAcgc  >  1:30082/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCGGTTGATCCACGCCGCCACGTCCCAGGCCTGCTGATCGCTGAGGCTGCCCGGCTTGCCCAGCGGCATGTTGTACTTGATGAACGACGC  >  NC_002947/4350119‑4350412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.