New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359674 =	43 (0.730)	3 (0.050)	3/248	NT	6.5%	coding (282/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359711 =	45 (0.810)					coding (245/1446 nt)	PP_3834	hypothetical protein

ACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCT  >  NC_002947/4359529‑4359822                                                                                                                                                  |                                                                                                                                                     cgccgggggccggtaagaccatcctcgccaatcagctggcctgcggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagcgagtcgcacgaacgcttgttccagtacctgtccacgctgtacttcttcgacccGgcg                                                                                                                                                   <  8:141198‑M1/4‑1 (MQ=255)  cttcttGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGgcgc                                                                                                                                                  <  1:278043/149‑1 (MQ=255)         gtgtCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTggtcgg                                                                                                                                           >  4:211776/1‑144 (MQ=255)          tgtCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAAc                                                                                                                                          <  2:5540/149‑1 (MQ=255)          tgtCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAAc                                                                                                                                          >  4:245554/1‑149 (MQ=255)                gcgcGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCTGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGAtt                                                                                                                                    <  1:268263/149‑1 (MQ=255)                  gcgGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGCTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGAtttt                                                                                                                                  <  4:73504/149‑1 (MQ=255)                    ggTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGt                                                                                                                                <  3:300596/149‑1 (MQ=255)                      tttCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGaa                                                                                                                                           <  3:106499/136‑1 (MQ=255)                      tttCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGaa                                                                                                                                           >  4:106499/1‑136 (MQ=255)                             aCGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGAc                                                                                                                         >  7:224977/1‑147 (MQ=255)                                 aCCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAGAGGCGCTGACGAACTgg                                                                                                                                       <  4:250758/129‑1 (MQ=255)                                 aCCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAGAGGCGCTGACGAACTgg                                                                                                                                       >  3:250758/1‑129 (MQ=255)                                   ccGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGCCCTGTTGACGGGCAATTTCCTGGCGCAGCAACCGCACAACCGCATCCAGCCCGTCATGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGAACAGCCCCg                                                                                                                 >  5:164822/1‑149 (MQ=255)                                    ctggcctgcggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagcgagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCgg                                                                                                                >  6:47434‑M1/111‑149 (MQ=255)                                       gcctgcggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagctagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCggg                                                                                                               >  7:141198‑M1/108‑147 (MQ=255)                                       gCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTc                                                                                                             <  1:146286/149‑1 (MQ=255)                                          ttGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa                                                                                                          <  7:62822/149‑1 (MQ=255)                                            cggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagcgagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa                                                                                                          >  3:195113‑M1/103‑147 (MQ=255)                                             aGCACACCGTCGACGATCAGCAGGCTGGCCTGTTTCCGGGCAATTTCCTGGCGCAGCAACCGCACCACAGCATACAGCCCGTCCTGCTCTAGGGTATAAAAGGAGCTGACGAACTCGATTTTGTCACCGACAAGCGCCGTGTCgaagaa                                                                                                       >  1:323512/1‑149 (MQ=255)                                                        gacgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTg                                                                                             <  3:245554/148‑1 (MQ=255)                                                           gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGa                                                                                           >  6:186831/1‑147 (MQ=255)                                                           gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGa                                                                                           >  6:181591/1‑147 (MQ=255)                                                                          cTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTAACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAGGc                                                                          >  6:176181/1‑149 (MQ=255)                                                                               gCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCg                                                                     >  4:238084/1‑149 (MQ=255)                                                                                  gggCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGc                                                                  <  5:181591/149‑1 (MQ=255)                                                                                  gggCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGc                                                                  <  5:186831/149‑1 (MQ=255)                                                                                           ccTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGc                                                                          <  3:16119/132‑1 (MQ=255)                                                                                           ccTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGc                                                                          >  4:16119/1‑132 (MQ=255)                                                                                            cTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                        <  7:71299/149‑1 (MQ=255)                                                                                            cTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                        <  8:224977/149‑1 (MQ=255)                                                                                               gcgcAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTCTCACCGACCAGCGCCGCGTCCAAGAAGTCCAGCGTGGACAGCTACTCGAACAAGAGTTCGAGCGACTCGCTCAGc                                                      >  5:270205/1‑148 (MQ=255)                                                                                                  cagcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAg                                                  >  3:149250/1‑149 (MQ=255)                                                                                                   agcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGt                                                 >  6:225283/1‑149 (MQ=255)                                                                                                    gcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGGGCTGACGACCTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTg                                                <  2:323512/149‑1 (MQ=255)                                                                                                      aaCCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAGGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                              <  5:176181/149‑1 (MQ=255)                                                                                                       aCCGCCCCACCGCATCCAGACCGGCCGGCTCTAGGGTATCAAAGGCGCTGACGCACTGGATTTTGTCACCGACCAGCGACGGGTCGCAGAAGTCCAGCGTGGACTGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                              >  6:365003/1‑148 (MQ=255)                                                                                                              caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa                                      >  2:105891/1‑149 (MQ=255)                                                                                                              caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa                                      >  6:348563/1‑149 (MQ=255)                                                                                                                        aGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGaccacc                            >  8:333533/1‑149 (MQ=255)                                                                                                                                cTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgc                     <  3:238084/148‑1 (MQ=255)                                                                                                                                 tGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcac                   >  7:129269/1‑149 (MQ=255)                                                                                                                                  gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcacg                  >  4:280934/1‑149 (MQ=255)                                                                                                                                   ctctAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCCCCGCCACGCACGt                 >  6:294559/1‑149 (MQ=255)                                                                                                                                   ctctAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGt                 >  3:142200/1‑149 (MQ=255)                                                                                                                                        gggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGa                                 >  6:63554/1‑128 (MQ=255)                                                                                                                                        gggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGa                                 <  5:63554/128‑1 (MQ=255)                                                                                                                                         ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCg            >  5:152734/1‑148 (MQ=255)                                                                                                                                             tCAAAGTCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTTCGACTCGCTCAGCAAATTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGc       <  6:270205/149‑1 (MQ=255)                                                                                                                                             tCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGc       >  6:253441/1‑149 (MQ=255)                                                                                                                                                  GGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCt  >  5:294559‑M1/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCT  >  NC_002947/4359529‑4359822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.