New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359674 =	43 (0.730)	3 (0.050)	3/248	NT	6.5%	coding (282/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359711 =	45 (0.810)					coding (245/1446 nt)	PP_3834	hypothetical protein

CCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCGGCCCCCGGCG  >  NC_002947/4359563‑4359855                                                                                                                                                     |                                                                                                                                                 ccGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGCCCTGTTGACGGGCAATTTCCTGGCGCAGCAACCGCACAACCGCATCCAGCCCGTCATGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGAACAGCCCCg                                                                                                                                                  >  5:164822/1‑149 (MQ=255)  ctggcctgcggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagcgagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCgg                                                                                                                                                 >  6:47434‑M1/111‑149 (MQ=255)     gcctgcggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagctagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCggg                                                                                                                                                >  7:141198‑M1/108‑147 (MQ=255)     gCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTc                                                                                                                                              <  1:146286/149‑1 (MQ=255)        ttGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa                                                                                                                                           <  7:62822/149‑1 (MQ=255)          cggccacgtgcgtggcggtggtcgcgtgctggtggccactttgctgagcgagtcgcacgaacgcttgttccagtacctgtccacgctggacttcttcgacccGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCgaa                                                                                                                                           >  3:195113‑M1/103‑147 (MQ=255)           aGCACACCGTCGACGATCAGCAGGCTGGCCTGTTTCCGGGCAATTTCCTGGCGCAGCAACCGCACCACAGCATACAGCCCGTCCTGCTCTAGGGTATAAAAGGAGCTGACGAACTCGATTTTGTCACCGACAAGCGCCGTGTCgaagaa                                                                                                                                        >  1:323512/1‑149 (MQ=255)                      gacgaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTg                                                                                                                              <  3:245554/148‑1 (MQ=255)                         gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGa                                                                                                                            >  6:181591/1‑147 (MQ=255)                         gaTCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGa                                                                                                                            >  6:186831/1‑147 (MQ=255)                                        cTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTAACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAGGc                                                                                                           >  6:176181/1‑149 (MQ=255)                                             gCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCg                                                                                                      >  4:238084/1‑149 (MQ=255)                                                gggCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGc                                                                                                   <  5:186831/149‑1 (MQ=255)                                                gggCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGc                                                                                                   <  5:181591/149‑1 (MQ=255)                                                         ccTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGc                                                                                                           <  3:16119/132‑1 (MQ=255)                                                         ccTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGc                                                                                                           >  4:16119/1‑132 (MQ=255)                                                          cTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                                                         <  7:71299/149‑1 (MQ=255)                                                          cTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                                                         <  8:224977/149‑1 (MQ=255)                                                             gcgcAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTCTCACCGACCAGCGCCGCGTCCAAGAAGTCCAGCGTGGACAGCTACTCGAACAAGAGTTCGAGCGACTCGCTCAGc                                                                                       >  5:270205/1‑148 (MQ=255)                                                                cagcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAg                                                                                   >  3:149250/1‑149 (MQ=255)                                                                 agcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGt                                                                                  >  6:225283/1‑149 (MQ=255)                                                                  gcaACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGGGCTGACGACCTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTg                                                                                 <  2:323512/149‑1 (MQ=255)                                                                    aaCCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAGGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               <  5:176181/149‑1 (MQ=255)                                                                     aCCGCCCCACCGCATCCAGACCGGCCGGCTCTAGGGTATCAAAGGCGCTGACGCACTGGATTTTGTCACCGACCAGCGACGGGTCGCAGAAGTCCAGCGTGGACTGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               >  6:365003/1‑148 (MQ=255)                                                                            caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa                                                                       >  6:348563/1‑149 (MQ=255)                                                                            caccGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCa                                                                       >  2:105891/1‑149 (MQ=255)                                                                                      aGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGaccacc                                                             >  8:333533/1‑149 (MQ=255)                                                                                              cTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgc                                                      <  3:238084/148‑1 (MQ=255)                                                                                               tGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcac                                                    >  7:129269/1‑149 (MQ=255)                                                                                                gCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCcacgcacg                                                   >  4:280934/1‑149 (MQ=255)                                                                                                 ctctAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCCCCGCCACGCACGt                                                  >  6:294559/1‑149 (MQ=255)                                                                                                 ctctAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGt                                                  >  3:142200/1‑149 (MQ=255)                                                                                                      gggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGa                                                                  <  5:63554/128‑1 (MQ=255)                                                                                                      gggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGa                                                                  >  6:63554/1‑128 (MQ=255)                                                                                                       ggTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCg                                             >  5:152734/1‑148 (MQ=255)                                                                                                        ttcgacccggcgctggtcggtgacaaaatccagttcgtcagcgccGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCg                                             >  3:195113‑M2/46‑147 (MQ=255)                                                                                                           tCAAAGTCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTTCGACTCGCTCAGCAAATTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGc                                        <  6:270205/149‑1 (MQ=255)                                                                                                           tCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGc                                        >  6:253441/1‑149 (MQ=255)                                                                                                             cccggcgctggtcggtgacaaaatccagttcgtcagcgccGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTAGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGc                                        >  7:141198‑M2/41‑147 (MQ=255)                                                                                                              ccggcgctggtcggtgacaaaatccagttcgtcagcgccGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAg                                     >  6:47434‑M2/40‑149 (MQ=255)                                                                                                                GGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCt                                   >  5:294559‑M1/1‑149 (MQ=255)                                                                                                                 GCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                                                         >  5:83267‑M1/1‑94 (MQ=255)                                                                                                                 GCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCa                                                                                         <  6:83267‑M1/94‑1 (MQ=255)                                                                                                                   GCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGAt                                <  6:71936‑M1/149‑1 (MQ=255)                                                                                                                        cGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               <  8:212885/97‑1 (MQ=255)                                                                                                                        cGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               >  3:256036/1‑97 (MQ=255)                                                                                                                        cGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               >  7:212885/1‑97 (MQ=255)                                                                                                                        cGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGc                                                                               <  4:256036/97‑1 (MQ=255)                                                                                                                         gAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGc                            >  5:27826/1‑147 (MQ=255)                                                                                                                           aCTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGTCGCAGGCCAGCTGATTGGCGAg                         >  4:129012/1‑148 (MQ=255)                                                                                                                           aCTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTAGCCGCAGGCCAGCTGATTGGCGAg                         >  4:40800/1‑148 (MQ=255)                                                                                                                               gATTTTGTCACCGACCCGCCCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACTTGGCCGCAGGCCAGCTGATTGGCGAGGAt                      <  6:164822/147‑1 (MQ=255)                                                                                                                               gATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGTCGCAGGCCAGCTGATTGGCGAGGAt                      <  3:129012/147‑1 (MQ=255)                                                                                                                               gATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATg                     <  7:333533/148‑1 (MQ=255)                                                                                                                               gATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATg                     <  4:149250/148‑1 (MQ=255)                                                                                                                                        aCCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCgg           >  7:49794/1‑149 (MQ=255)                                                                                                                                        aCCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCgg           >  6:87482/1‑149 (MQ=255)                                                                                                                                                 cgccGGGTCGAAGAAGTACAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCGGCCCCcggcg  <  8:141198‑M2/145‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTGGCGCAGCAACCGCACCACCGCATCCAGCCCGTCCTGCTCTAGGGTATCAAAGGCGCTGACGAACTGGATTTTGTCACCGACCAGCGCCGGGTCGAAGAAGTCCAGCGTGGACAGGTACTGGAACAAGCGTTCGTGCGACTCGCTCAGCAAAGTGGCCACCAGCACGCGACCACCGCCACGCACGTGGCCGCAGGCCAGCTGATTGGCGAGGATGGTCTTACCGGCCCCCGGCG  >  NC_002947/4359563‑4359855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.