New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4679619	43 (0.730)	4 (0.070)	3/246	NT	9.0%	coding (338/447 nt)	rnhA	ribonuclease H
	?	NC_002947	= 4679643	41 (0.740)					coding (314/447 nt)	rnhA	ribonuclease H

ACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTC  >  NC_002947/4679472‑4679767                                                                                                                                                    |                                                                                                                                                     aCTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCg                                                                                                                                                     <  4:178758/149‑1 (MQ=255)      cATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGa                                                                                                                                                <  5:279567/149‑1 (MQ=255)           gTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGc                                                                                                                                           <  3:69110/149‑1 (MQ=255)                     ccGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGCTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgct                                                                                                                                 >  6:134104/1‑149 (MQ=255)                        cgATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                              <  8:54854/149‑1 (MQ=255)                         gATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTg                                                                                                                             <  7:289721‑M2/149‑2 (MQ=255)                           ttGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATTTGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgcc                                                                                                                           >  1:196054‑M2/1‑146 (MQ=255)                                ccccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaag                                                                                                                      <  2:337333‑M1/149‑33 (MQ=255)                                ccccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaag                                                                                                                      <  3:10668‑M1/149‑33 (MQ=255)                                     gCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGc                                                                                                                 <  4:301050/149‑1 (MQ=255)                                      cTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgaggaggtcaaccgccacaaggtaacc                                                                                                                <  6:121787‑M1/149‑39 (MQ=255)                                       tCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGt                                                                                                               >  6:229440/1‑149 (MQ=255)                                           cGCTGGGCGCGCTCCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGAc                                                                                                                                               >  4:255478/1‑113 (MQ=255)                                           cGCTGGGCGCGCTCCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGAc                                                                                                                                               <  3:255478/113‑1 (MQ=255)                                           cGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaag                                                                                                                      >  4:74165‑M1/1‑106 (MQ=255)                                           cGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGttctt                                                                                                           >  5:297724/1‑149 (MQ=255)                                               gggCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCAcc                                                                                                       <  4:286206/149‑1 (MQ=255)                                                ggCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCAcc                                                                                                       <  5:203940/148‑1 (MQ=255)                                                 gcgcgcACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCgg                                                                                                     <  5:229440/149‑1 (MQ=255)                                                         cTCATCGACCCCATGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACGTCGAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                             >  1:300468/1‑149 (MQ=255)                                                         cTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                             >  1:339206/1‑149 (MQ=255)                                                         cTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                             >  5:372220/1‑149 (MQ=255)                                                            aTCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgc                                                                                                                               <  6:57757/112‑1 (MQ=255)                                                            aTCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgc                                                                                                                               >  5:57757/1‑112 (MQ=255)                                                            aTCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggcgg                                                                                          >  1:307356/1‑149 (MQ=255)                                                               gACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTAGCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                              >  1:118535/1‑110 (MQ=255)                                                               gACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                              <  2:118535/110‑1 (MQ=255)                                                                    cACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTc                                                                                  >  1:51925/1‑149 (MQ=255)                                                                      ctgTTGGCCAGCTGGTCGGCGCGTTCGTTTGCGGGGTGGCCAATATGGCCGCGCACACACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCa                                                                                <  6:141997/147‑1 (MQ=255)                                                                                    ggcGGAGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCTCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGcttctt                                                                    <  4:225730/145‑1 (MQ=255)                                                                                    gTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCttcttc                                                                   <  3:281922/148‑1 (MQ=255)                                                                                         cgcgTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGtt                                                              >  8:232606/1‑148 (MQ=255)                                                                                                    ccGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTc                                                  <  2:307356/149‑1 (MQ=255)                                                                                                    ccGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTc                                                  <  6:297724/149‑1 (MQ=255)                                                                                                          tGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGAt                                            <  8:289721/149‑1 (MQ=255)                                                                                                            gCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatcc                                                      <  6:306853/137‑1 (MQ=255)                                                                                                            gCCAATATGGCCGCGCACCCACTTCCACGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatcc                                                      >  5:306853/1‑137 (MQ=255)                                                                                                              cAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGGTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGccc                                        <  6:73163/149‑1 (MQ=255)                                                                                                                    ggCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTtcat                                   >  8:341997/1‑148 (MQ=255)                                                                                                                      ccGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                >  8:14260/1‑149 (MQ=255)                                                                                                                         cgcACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGt                              >  3:155891/1‑148 (MQ=255)                                                                                                                                  ttCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTc                    >  3:173298/1‑149 (MQ=255)                                                                                                                                      aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCCGACACGCTTCTTCCAGTTGCCCATCCATTCGGTGATGCCCTTCATCACGTACTGCGAGTAggtg                >  7:87948/1‑149 (MQ=255)                                                                                                                                      aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtg                <  2:300468/149‑1 (MQ=255)                                                                                                                                      aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtg                <  7:341997/149‑1 (MQ=255)                                                                                                                                      aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGACCTTCATCACGTACTGCGAGTCggtg                >  4:59432/1‑149 (MQ=255)                                                                                                                                       ggTTACCTTGTGGCGGTTGACCTCCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgag               <  6:121787‑M2/149‑112 (MQ=255)                                                                                                                                        gTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCg                        <  7:35647/139‑1 (MQ=255)                                                                                                                                        gTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCg                        >  8:35647/1‑139 (MQ=255)                                                                                                                                             cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg         <  3:10668‑M2/149‑118 (MQ=255)                                                                                                                                             cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg         <  2:337333‑M2/149‑118 (MQ=255)                                                                                                                                             cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcg                    >  4:74165‑M2/1‑32 (MQ=255)                                                                                                                                             cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                <  6:326175/126‑1 (MQ=255)                                                                                                                                             cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                >  5:326175/1‑126 (MQ=255)                                                                                                                                                  ggCagcagctcgatgagcaggtcaaccgccacaaggtaacctggaagtgggtgcgcggccaaattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctggggtacaa    >  1:196054‑M1/1‑3 (MQ=255)                                                                                                                                                    cagcagctcgatgagcaggtcaaccgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctggggtacaatc  <  7:289721‑M1/149‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTC  >  NC_002947/4679472‑4679767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.