New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4679619	43 (0.730)	4 (0.070)	3/246	NT	9.0%	coding (338/447 nt)	rnhA	ribonuclease H
	?	NC_002947	= 4679643	41 (0.740)					coding (314/447 nt)	rnhA	ribonuclease H

CGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGCTTGAGCGA  >  NC_002947/4679495‑4679785                                                                                                                                                     |                                                                                                                                               cgATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                                                <  8:54854/149‑1 (MQ=255)  gATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTg                                                                                                                                               <  7:289721‑M2/149‑2 (MQ=255)    ttGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATTTGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgcc                                                                                                                                             >  1:196054‑M2/1‑146 (MQ=255)              gCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGc                                                                                                                                   <  4:301050/149‑1 (MQ=255)                tCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGt                                                                                                                                 >  6:229440/1‑149 (MQ=255)                    cGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGttctt                                                                                                                             >  5:297724/1‑149 (MQ=255)                        gggCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCAcc                                                                                                                         <  4:286206/149‑1 (MQ=255)                         ggCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCAcc                                                                                                                         <  5:203940/148‑1 (MQ=255)                          gcgcgcACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCgg                                                                                                                       <  5:229440/149‑1 (MQ=255)                                  cTCATCGACCCCATGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACGTCGAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                                               >  1:300468/1‑149 (MQ=255)                                  cTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                                               >  1:339206/1‑149 (MQ=255)                                  cTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTgg                                                                                                               >  5:372220/1‑149 (MQ=255)                                     aTCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggcgg                                                                                                            >  1:307356/1‑149 (MQ=255)                                        gACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTAGCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                                                >  1:118535/1‑110 (MQ=255)                                        gACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAgctgct                                                                                                                                                <  2:118535/110‑1 (MQ=255)                                             cACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTc                                                                                                    >  1:51925/1‑149 (MQ=255)                                               ctgTTGGCCAGCTGGTCGGCGCGTTCGTTTGCGGGGTGGCCAATATGGCCGCGCACACACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCa                                                                                                  <  6:141997/147‑1 (MQ=255)                                                             ggcGGAGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCTCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGcttctt                                                                                      <  4:225730/145‑1 (MQ=255)                                                             gTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCttcttc                                                                                     <  3:281922/148‑1 (MQ=255)                                                                  cgcgTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGtt                                                                                >  8:232606/1‑148 (MQ=255)                                                                             ccGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTc                                                                    <  6:297724/149‑1 (MQ=255)                                                                             ccGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTc                                                                    <  2:307356/149‑1 (MQ=255)                                                                                   tGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGAt                                                              <  8:289721/149‑1 (MQ=255)                                                                                     gCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatcc                                                                        <  6:306853/137‑1 (MQ=255)                                                                                     gCCAATATGGCCGCGCACCCACTTCCACGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatcc                                                                        >  5:306853/1‑137 (MQ=255)                                                                                       cAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGGTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGccc                                                          <  6:73163/149‑1 (MQ=255)                                                                                             ggCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTtcat                                                     >  8:341997/1‑148 (MQ=255)                                                                                               ccGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                                  >  8:14260/1‑149 (MQ=255)                                                                                                  cgcACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGt                                                >  3:155891/1‑148 (MQ=255)                                                                                                           ttCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTc                                      >  3:173298/1‑149 (MQ=255)                                                                                                               aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCCGACACGCTTCTTCCAGTTGCCCATCCATTCGGTGATGCCCTTCATCACGTACTGCGAGTAggtg                                  >  7:87948/1‑149 (MQ=255)                                                                                                               aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtg                                  <  2:300468/149‑1 (MQ=255)                                                                                                               aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtg                                  <  7:341997/149‑1 (MQ=255)                                                                                                               aGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGACCTTCATCACGTACTGCGAGTCggtg                                  >  4:59432/1‑149 (MQ=255)                                                                                                                ggTTACCTTGTGGCGGTTGACCTCCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgag                                 <  6:121787‑M2/149‑112 (MQ=255)                                                                                                                 gTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCg                                          <  7:35647/139‑1 (MQ=255)                                                                                                                 gTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCg                                          >  8:35647/1‑139 (MQ=255)                                                                                                                      cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg                           <  2:337333‑M2/149‑118 (MQ=255)                                                                                                                      cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg                           <  3:10668‑M2/149‑118 (MQ=255)                                                                                                                      cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcg                                      >  4:74165‑M2/1‑32 (MQ=255)                                                                                                                      cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                                  <  6:326175/126‑1 (MQ=255)                                                                                                                      cTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCAc                                                  >  5:326175/1‑126 (MQ=255)                                                                                                                                   aCCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCAtt               >  6:229894/1‑148 (MQ=255)                                                                                                                                     cTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCAc            >  1:113918/1‑149 (MQ=255)                                                                                                                                        cTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGc          <  2:51925/148‑1 (MQ=255)                                                                                                                                           aTCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGCtt        >  5:31580/1‑147 (MQ=255)                                                                                                                                               aGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCAc            >  1:65661/1‑139 (MQ=255)                                                                                                                                               aGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCAc            <  2:65661/139‑1 (MQ=255)                                                                                                                                               aGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGc          <  1:191353/141‑1 (MQ=255)                                                                                                                                               aGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGc          >  2:191353/1‑141 (MQ=255)                                                                                                                                               aGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGCTTGAGCGa  <  4:155891/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTCATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACCTCGCATTCACGCTTGAGCGA  >  NC_002947/4679495‑4679785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.