New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5153334	40 (0.680)	5 (0.090)	5/252	NT	11.4%	intergenic (‑1411/+3)	PP_5696/PP_4537	hypothetical protein/membrane protein
	?	NC_002947	= 5153367	39 (0.690)					coding (846/876 nt)	PP_4537	membrane protein

GAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCG  >  NC_002947/5153189‑5153482                                                                                                                                                  |                                                                                                                                                     gAGCCGGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTGGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGa                                                                                                                                                     <  2:284987/147‑1 (MQ=255)      tGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTCCAGCCCCCGGATCAAAGGGCGAGTCAGGc                                                                                                                                              >  8:312239/1‑149 (MQ=255)          tCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTg                                                                                                                                          >  1:7344/1‑149 (MQ=255)                  cGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAg                                                                                                                                  >  3:43079/1‑149 (MQ=255)                  cGAGTGGCAATGACATGCGCGTAGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTAGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAg                                                                                                                                  >  8:124168/1‑149 (MQ=255)                   gAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAgc                                                                                                                                 >  7:346672/1‑149 (MQ=255)                         cAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGcgcacaggcgccgctggccggcaaggc                                                                                                                           <  6:336464‑M1/149‑28 (MQ=255)                          aaTGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCt                                                                                                                          >  1:41886/1‑149 (MQ=255)                            tGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAgcg                                                                                                                                >  7:15125/1‑141 (MQ=255)                            tGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAgcg                                                                                                                                <  8:15125/141‑1 (MQ=255)                                aTGCGCGTAGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGc                                                                                                                    >  7:124168‑M2/1‑148 (MQ=255)                                 tGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGa                                                                                                                                                     <  6:84136/115‑1 (MQ=255)                                 tGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGa                                                                                                                                                     >  5:84136/1‑115 (MQ=255)                                               gCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGcgcacaggcgccgctggccggcaaggcctgactcgccctttgat                                                                                                          <  2:307409‑M1/144‑45 (MQ=255)                                               gCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGcgaacaggcgccgctggccggcaaggcctgactcgccctttgat                                                                                                          >  1:307409‑M1/1‑100 (MQ=255)                                                 cGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTc                                                                                                   >  5:201507/1‑149 (MQ=255)                                                    gcgcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGcgcacaggcgccgctggccggcaaggcctgactcgccctttgatc                                                                                                         >  3:275195‑M1/1‑95 (MQ=255)                                                    gcgcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGcgcacaggcgccgctggccggcaaggcctgactcgccctttgatc                                                                                                         <  4:275195‑M1/140‑46 (MQ=255)                                                    gcgcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGc                                                                                                <  2:41886/149‑1 (MQ=255)                                                      gcAGGGCGGCAGAGCCGATGCCGCGTCGCATTGAATATATGAGTGAGTCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTgcg                                                                                                                     <  2:266164/126‑1 (MQ=255)                                                      gcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCCCCCAGGCGGCTCAGCca                                                                                              >  8:198680/1‑149 (MQ=255)                                                      gcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAAGCTTGAGATTGCCCGGGCAGCCCTGCAGCCCCCGGATCAAAGGGGGAGTAACGCCTTGGCGGCCAGCGGCGCCTGTgcg                                                                                                                     >  1:266164/1‑126 (MQ=255)                                                              gcAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACg                                                                                      <  3:56491/149‑1 (MQ=255)                                                                                   aTTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGa                                                                 <  2:289803/149‑1 (MQ=255)                                                                                        aGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCCGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAAc                                                            <  8:278290/149‑1 (MQ=255)                                                                                         gATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCGCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGAc                                                                                       >  1:219387/1‑121 (MQ=255)                                                                                         gATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGAc                                                                                       <  2:219387/121‑1 (MQ=255)                                                                                            atGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGAAGATCCCCCCGCCGATGAACAgcc                                                        >  3:289210/1‑149 (MQ=255)                                                                                              gagtgagGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAgccgc                                                      >  6:377284/1‑149 (MQ=255)                                                                                               agtgagGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAgccgc                                                      <  2:7344/148‑1 (MQ=255)                                                                                                    ggCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAAc                                                <  4:43079/149‑1 (MQ=255)                                                                                                       ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACTGACGCCAGGATGATcccc                                                                        >  5:28400/1‑122 (MQ=255)                                                                                                       ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACTGACGCCAGGATGATcccc                                                                        <  6:28400/122‑1 (MQ=255)                                                                                                       ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGc                                             >  1:158054/1‑149 (MQ=255)                                                                                                        tGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCt                                            >  7:176407/1‑149 (MQ=255)                                                                                                          agaTTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTc                                           <  7:312239/148‑1 (MQ=255)                                                                                                             ttGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGc                                       >  5:293024/1‑149 (MQ=255)                                                                                                                   gggCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGgatgat                                                                            >  7:83268/1‑106 (MQ=255)                                                                                                                   gggCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGgatgat                                                                            <  8:83268/106‑1 (MQ=255)                                                                                                                         cccTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGa                             <  8:346672/147‑1 (MQ=255)                                                                                                                          ccTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGAAGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCa                          <  4:289210/149‑1 (MQ=255)                                                                                                                                 cccccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGccc                                                    >  6:76566/1‑116 (MQ=255)                                                                                                                                  ccccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGtt                   >  5:177911/1‑148 (MQ=255)                                                                                                                                   cccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGCTCAACAGGtt                   >  4:112814/1‑147 (MQ=255)                                                                                                                                       gATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgc                      <  4:275195‑M2/140‑96 (MQ=255)                                                                                                                                       gATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgc                      >  3:275195‑M2/1‑45 (MQ=255)                                                                                                                                        aTCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTTCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggc                 >  1:307409‑M2/1‑44 (MQ=255)                                                                                                                                        aTCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggc                 <  2:307409‑M2/144‑101 (MQ=255)                                                                                                                                         tCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATACCCCCGCCGATGAACAGCCGCCCCAACGCCTCGTGCTGGTTCCAGATCAAAAGGTTcagaacca           >  6:106500/1‑144 (MQ=255)                                                                                                                                          cAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTcagcagcag          >  7:208278/1‑149 (MQ=255)                                                                                                                                           aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCTCCGCCAGGAGGATCCCCCCGCCGATGAACAGCCGCCCCAACGGATCGAGCGGGTTACAGATCAACCGGGTAagcagcagc         >  1:364862/1‑149 (MQ=255)                                                                                                                                           aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCagcagcagc         <  6:201507/149‑1 (MQ=255)                                                                                                                                           aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCagcagcagc         >  4:70772/1‑149 (MQ=255)                                                                                                                                                  gcgcacaggcgccgctggccggcaaggcctgactcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggccaaccctacgcgcat  >  7:124168‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GAGCCTGTATCAGCAGCCGAGTGGCAATGACATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCG  >  NC_002947/5153189‑5153482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.