New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5153334	40 (0.680)	5 (0.090)	5/252	NT	11.4%	intergenic (‑1411/+3)	PP_5696/PP_4537	hypothetical protein/membrane protein
	?	NC_002947	= 5153367	39 (0.690)					coding (846/876 nt)	PP_4537	membrane protein

ATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTTCATCACCGCCA  >  NC_002947/5153220‑5153509                                                                                                                                                    |                                                                                                                                               aTGCGCGTAGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGc                                                                                                                                               >  7:124168‑M2/1‑148 (MQ=255)                  cGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTc                                                                                                                              >  5:201507/1‑149 (MQ=255)                     gcgcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGc                                                                                                                           <  2:41886/149‑1 (MQ=255)                       gcAGGGCGGCAGAGCCGATGCCGCGTCGCATTGAATATATGAGTGAGTCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTgcg                                                                                                                                                <  2:266164/126‑1 (MQ=255)                       gcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCCCCCAGGCGGCTCAGCca                                                                                                                         >  8:198680/1‑149 (MQ=255)                       gcACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAAGCTTGAGATTGCCCGGGCAGCCCTGCAGCCCCCGGATCAAAGGGGGAGTAACGCCTTGGCGGCCAGCGGCGCCTGTgcg                                                                                                                                                >  1:266164/1‑126 (MQ=255)                               gcAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACg                                                                                                                 <  3:56491/149‑1 (MQ=255)                                                    aTTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGa                                                                                            <  2:289803/149‑1 (MQ=255)                                                         aGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCCGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAAc                                                                                       <  8:278290/149‑1 (MQ=255)                                                          gATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCGCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGAc                                                                                                                  >  1:219387/1‑121 (MQ=255)                                                          gATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGAc                                                                                                                  <  2:219387/121‑1 (MQ=255)                                                             atGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGAAGATCCCCCCGCCGATGAACAgcc                                                                                   >  3:289210/1‑149 (MQ=255)                                                               gagtgagGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAgccgc                                                                                 >  6:377284/1‑149 (MQ=255)                                                                agtgagGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAgccgc                                                                                 <  2:7344/148‑1 (MQ=255)                                                                     ggCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAAc                                                                           <  4:43079/149‑1 (MQ=255)                                                                        ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACTGACGCCAGGATGATcccc                                                                                                   <  6:28400/122‑1 (MQ=255)                                                                        ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACTGACGCCAGGATGATcccc                                                                                                   >  5:28400/1‑122 (MQ=255)                                                                        ttGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGc                                                                        >  1:158054/1‑149 (MQ=255)                                                                         tGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCt                                                                       >  7:176407/1‑149 (MQ=255)                                                                           agaTTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTc                                                                      <  7:312239/148‑1 (MQ=255)                                                                              ttGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGc                                                                  >  5:293024/1‑149 (MQ=255)                                                                                    gggCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGgatgat                                                                                                       >  7:83268/1‑106 (MQ=255)                                                                                    gggCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGgatgat                                                                                                       <  8:83268/106‑1 (MQ=255)                                                                                          cccTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGa                                                        <  8:346672/147‑1 (MQ=255)                                                                                           ccTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGAAGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCa                                                     <  4:289210/149‑1 (MQ=255)                                                                                                  cccccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGccc                                                                               >  6:76566/1‑116 (MQ=255)                                                                                                   ccccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGtt                                              >  5:177911/1‑148 (MQ=255)                                                                                                    cccGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGCTCAACAGGtt                                              >  4:112814/1‑147 (MQ=255)                                                                                                        gATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgc                                                 >  3:275195‑M2/1‑45 (MQ=255)                                                                                                        gATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgc                                                 <  4:275195‑M2/140‑96 (MQ=255)                                                                                                         aTCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTTCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggc                                            >  1:307409‑M2/1‑44 (MQ=255)                                                                                                         aTCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggc                                            <  2:307409‑M2/144‑101 (MQ=255)                                                                                                          tCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATACCCCCGCCGATGAACAGCCGCCCCAACGCCTCGTGCTGGTTCCAGATCAAAAGGTTcagaacca                                      >  6:106500/1‑144 (MQ=255)                                                                                                           cAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTcagcagcag                                     >  7:208278/1‑149 (MQ=255)                                                                                                            aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCTCCGCCAGGAGGATCCCCCCGCCGATGAACAGCCGCCCCAACGGATCGAGCGGGTTACAGATCAACCGGGTAagcagcagc                                    >  1:364862/1‑149 (MQ=255)                                                                                                            aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCagcagcagc                                    <  6:201507/149‑1 (MQ=255)                                                                                                            aaaGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCagcagcagc                                    >  4:70772/1‑149 (MQ=255)                                                                                                                      tCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGca                          <  5:377284/149‑1 (MQ=255)                                                                                                                        aGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGcac                         <  6:293024/148‑1 (MQ=255)                                                                                                                          gCCTTGCCGGCCAGCGGCGCCTGTGCGcgccctttgatccgggggctgcagggcagccccggcaatctcaagcctcactcatatcttcaatgcgacgcggcatcggctctgccgccgtgcgcccggccaaccccacgcgcatgtcattg                      <  6:336464‑M2/149‑123 (MQ=255)                                                                                                                          gCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGGTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATg                      >  3:333984/1‑149 (MQ=255)                                                                                                                               gCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAg                   <  6:177911/147‑1 (MQ=255)                                                                                                                               gCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGgt                 >  6:54329/1‑149 (MQ=255)                                                                                                                                    ccAGCGGCGCCTGTGCGCGCCCAACCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTtc            <  5:106500/149‑1 (MQ=255)                                                                                                                                        cggcgCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTtcatca        >  3:349903/1‑149 (MQ=255)                                                                                                                                         ggcgCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTTCATCAc       >  5:12991/1‑149 (MQ=255)                                                                                                                                              cTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTTCATCACCGCCa  <  7:198680/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               ATGCGCGTGGGGTTGGCCGGGCGCACGGCGGCAGAGCCGATGCCGCGTCGCATTGAAGATATGAGTGAGGCTTGAGATTGCCGGGGCTGCCCTGCAGCCCCCGGATCAAAGGGCGAGTCAGGCCTTGCCGGCCAGCGGCGCCTGTGCGCGCCCACCCAGGCGGCTCAGCCACACCGACGCCAGGATGATCCCCCCGCCGATGAACAGCCGCCCCAACGGCTCGTGCTGGTTCCAGATCAACAGGTTCAGCAGCAGCCCCACCGGCACATGCAGGTTGTTCATCACCGCCA  >  NC_002947/5153220‑5153509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.