New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 834263	49 (0.830)	3 (0.050)	3/244	NT	6.2%	coding (939/1023 nt)	PP_0717	membrane protein
	?	NC_002947	= 834286	45 (0.820)					coding (962/1023 nt)	PP_0717	membrane protein

AGAGCCCGGCGTACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACCGCGGCGCCCACCGTCGGA  >  NC_002947/834145‑834429                                                                                                                                              |                                                                                                                                                 agagCCCGGCGTACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagcgc                                                                                                                                            <  4:317421‑M2/148‑7 (MQ=255)    gCCCGGCGTACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATg                                                                                                                                        <  5:196919/149‑1 (MQ=255)     cccGGCGTACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGt                                                                                                                                       >  8:123454/1‑149 (MQ=255)            tACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCTCCATGTTGATCTg                                                                                                                                <  2:299178/149‑1 (MQ=255)            tACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTg                                                                                                                                <  7:202279/149‑1 (MQ=255)                gggTCAGTTGCCTGACGTCCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGAtt                                                                                                                            <  2:347724/149‑1 (MQ=255)                   tCAGTTTCCTGACGACCATGTTGATCTTGCTGGGGCAGGCGTTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGAc                                                                                                                         <  4:48611/149‑1 (MQ=255)                    cAGTTGCCTGACGACCATGATGATCTTGCCGGGGCAGGCGGTGCACGACAGGGCAGGTGGGCAGGATGTGTACCAGGCAATTGCGCTGCGTATGGCGCTGGTGCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGAcc                                                                                                                        <  6:78057/149‑1 (MQ=255)                              acgacCATGTTGATCTTGCTGGGGCATTCGGTTCAGGACAGTGGAGGTGGGCAGGATGTGTACAATGCATTTGCGTTGCGTATTGGGCTGTTTCTGGCGGTTTCGGTGTATGCCAGCGCGATGTTGATCTGGATTTACCGGC‑TTCGGa                                                                                                              <  7:16089/148‑1 (MQ=255)                                gacCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGATTc                                                                                                           >  3:303338/1‑149 (MQ=255)                                   cATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATg                                                                                                                                        >  7:69773/1‑118 (MQ=255)                                   cATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATg                                                                                                                                        <  8:69773/118‑1 (MQ=255)                                   cATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGgc                                                                                                        >  5:356610/1‑149 (MQ=255)                                   cATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGACAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGgc                                                                                                        >  2:268544/1‑149 (MQ=255)                                    aTGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCg                                                                                                                <  7:30277/140‑1 (MQ=255)                                    aTGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCg                                                                                                                >  8:30277/1‑140 (MQ=255)                                         gATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCgggg                                                                                                  >  2:13198/1‑148 (MQ=255)                                               gCTGGGGCAGTCGGTGGAGGCCAGTGCTGGTGGGTAGTATGTTTACAAGCCATTGGCGGGGCGTATGCCGCTGTTTCTGGCGGTGTCGGCGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGcttctt                                                                                             <  1:290368/148‑1 (MQ=255)                                               gCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGcttctt                                                                                             <  8:351914/148‑1 (MQ=255)                                               gCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGcttc                                                                                               <  7:123454/146‑1 (MQ=255)                                                    ggCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCt                                                                                                                                 >  4:164061/1‑108 (MQ=255)                                                    ggCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCt                                                                                                                                 <  3:164061/108‑1 (MQ=255)                                                     gCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagc                                                                                                                                              <  4:299474‑M2/94‑5 (MQ=255)                                                     gCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagc                                                                                                                                              >  3:299474‑M2/1‑90 (MQ=255)                                                      cAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTa                                                                                     <  5:334146/149‑1 (MQ=255)                                                         tCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGc                                                                                  >  1:117179/1‑149 (MQ=255)                                                                aGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAgcgcgcgag                                                                           >  8:253275/1‑146 (MQ=255)                                                                  gACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTcc                                                                         <  3:317421/149‑1 (MQ=255)                                                                            gTGGGCCGGCTGTGTACATCGCCTTCGCGGGGGGCCGGGCTCGGTTGCTGGCGCGGTCTGTGTAGGCCAGCGCCATGTTGCTCTGGATTGACCGGC‑TGCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCa                                                               <  4:303338/149‑1 (MQ=255)                                                                               ggCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAggg                                                            <  2:117179/149‑1 (MQ=255)                                                                                      tgtgTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAAtt                                                                 <  8:41814/137‑1 (MQ=255)                                                                                      tgtgTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAAtt                                                                 >  7:41814/1‑137 (MQ=255)                                                                                         gtACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGAGGTTAAGCCCGCTCAACACGCAATTCAGGGCAGCCCATc                                                   >  8:314140/1‑148 (MQ=255)                                                                                             aaGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAAccc                                              >  3:65292/1‑149 (MQ=255)                                                                                                        tgTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTcc                                   <  7:314140/148‑1 (MQ=255)                                                                                                         gTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCa                                  <  6:268810/149‑1 (MQ=255)                                                                                                          tGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTc                                    >  5:166395/1‑146 (MQ=255)                                                                                                           gCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagcgccatacgcaccgcaaatgccttgtacacatcctgcccacctgcactgtcctgcaccgactgccccagcaagatcaacatggtcgtcaggcaactgacccagtacgccg                                 <  6:242307‑M2/149‑114 (MQ=255)                                                                                                              tATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagcgccatacgcaccgcaaatgccttgtacacatcctgcccacctgcactgtcctgcaccgactgccccagcaagatcaacatgg                                                            >  5:364400‑M2/1‑33 (MQ=255)                                                                                                              tATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCcagcgccatacgcaccgcaaatgccttgtacacatcctgcccacctgcactgtcctgcaccgactgccccagcaagatcaacatgg                                                            <  6:364400‑M2/119‑87 (MQ=255)                                                                                                              tATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTc                                    <  1:125645/142‑1 (MQ=255)                                                                                                              tATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTc                                    >  2:125645/1‑142 (MQ=255)                                                                                                                tGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAgg                            <  6:356610/148‑1 (MQ=255)                                                                                                                tGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGc                           <  6:166395/149‑1 (MQ=255)                                                                                                                  gcgcTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCa                          >  3:87046/1‑148 (MQ=255)                                                                                                                    gcTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATcc                       >  6:321782/1‑149 (MQ=255)                                                                                                                          tCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCTGGCTTCTTCGCGTTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACcgc                  <  1:268544/148‑1 (MQ=255)                                                                                                                              gCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACCGCGgcgc             >  4:315728/1‑149 (MQ=255)                                                                                                                                  tgtcggtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTATTAGCGGTTAAGCCCGGTGTACAGGCAATTAAGGGCTGCCAATCAAACCCACTCTCTTCCAGATAGGCATCCACCGCGGCGCCCAc         >  1:356164/1‑149 (MQ=255)                                                                                                                                    tcggtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGCTTTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAAccc                                              >  1:72095/1‑111 (MQ=255)                                                                                                                                    tcggtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAAccc                                              <  2:72095/110‑1 (MQ=255)                                                                                                                                    tcggtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACCGCGGCGCCCACCg       >  7:236792/1‑149 (MQ=255)                                                                                                                                      ggtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACCGCGGCGCCCACCGTc     >  2:322029/1‑149 (MQ=255)                                                                                                                                       gtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTcgc                                                                                          <  4:66956/63‑1 (MQ=255)                                                                                                                                       gtgtATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTcgc                                                                                          >  3:66956/1‑63 (MQ=255)                                                                                                                                          tATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGCCAATTCAGGGCTGCCAATCAACCCCACTCTCATCCAGATAGGCATCCACCGCGGCGCCCACCGTCGGa  <  4:65292/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 AGAGCCCGGCGTACTGGGTCAGTTGCCTGACGACCATGTTGATCTTGCTGGGGCAGTCGGTGCAGGACAGTGCAGGTGGGCAGGATGTGTACAAGGCATTTGCGGTGCGTATGGCGCTGTTTCTGGCGGTGTCGGTGTATGCCAGCGCCATGTTGATCTGGATTGACCGGC‑TTCGGAGTCGGCGCGGGCTTCTTCGCGGTTAAGCCCGCTCTCCAGGCAATTCAGGGCTGCCAATCAACCCCACTCTCTTCCAGATAGGCATCCACCGCGGCGCCCACCGTCGGA  >  NC_002947/834145‑834429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.