New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2963491	50 (0.850)	3 (0.050)	3/252	NT	6.4%	coding (441/942 nt)	PP_2593	ferric siderophore ABC transporter permease
	?	NC_002947	= 2963537	40 (0.710)					coding (395/942 nt)	PP_2593	ferric siderophore ABC transporter permease

GCACGGCCGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGCCCATGCCCAG  >  NC_002947/2963391‑2963682                                                                                                                                                   |                                                                                                                                                   gCACGGCCGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAc                                                                                                                                                   <  5:169770‑M2/148‑2 (MQ=255)     ggCCGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAccag                                                                                                                                                <  3:33767‑M2/147‑5 (MQ=255)     ggCCGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAccag                                                                                                                                                <  5:140526‑M2/147‑5 (MQ=255)       ccGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACcagcagc                                                                                                                                            <  6:124442/149‑1 (MQ=255)            tACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGaa                                                                                                                                       <  2:65577/149‑1 (MQ=255)            tACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGaa                                                                                                                                       <  2:363120/149‑1 (MQ=255)               agcagcAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTa                                                                                                                                    >  8:50652/1‑149 (MQ=255)                gcctcaACTGCGGCGAGGCCCGGTTGAACGAAGCCTGGGGGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAAGGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTac                                                                                                                                   <  7:113618/145‑1 (MQ=255)                   gcaACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACg                                                                                                                                <  6:52632/149‑1 (MQ=255)                    caACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGAACATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACgt                                                                                                                               >  3:34578/1‑149 (MQ=255)                           ggcgATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGttttt                                                                                                                        <  6:140526/149‑1 (MQ=255)                            gcgATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTg                                                                                                                       <  7:50652/149‑1 (MQ=255)                             cgATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGc                                                                                                                      <  7:107621/149‑1 (MQ=255)                              gATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGcc                                                                                                                     <  1:313694/149‑1 (MQ=255)                              gATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGcc                                                                                                                     <  3:57034/149‑1 (MQ=255)                              gATGCCCGGTGGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGcc                                                                                                                     <  1:227423/149‑1 (MQ=255)                                                       tgtAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAgg                                                                                            <  4:156774/149‑1 (MQ=255)                                                           gCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGccc                                                                                        <  6:169770/149‑1 (MQ=255)                                                           gCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGcc                                                                                         <  4:34578/148‑1 (MQ=255)                                                                gcagcaTCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAg                                                                                   <  3:214752/149‑1 (MQ=255)                                                                    caTCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGc                                                                               <  8:40787/149‑1 (MQ=255)                                                                    caTCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGc                                                                               >  7:40787/1‑149 (MQ=255)                                                                      tCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGcc                                                                              >  7:215876/1‑148 (MQ=255)                                                                      tCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGcc                                                                              >  2:154000/1‑148 (MQ=255)                                                                         agaACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGc                                                                          <  5:322614/149‑1 (MQ=255)                                                                            aCTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATc                                                                       <  1:154000/149‑1 (MQ=255)                                                                              tCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAGACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAg                                                                     >  3:107735/1‑149 (MQ=255)                                                                              tCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAg                                                                     >  4:269282/1‑149 (MQ=255)                                                                                gCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAg                                                                     <  3:281061/147‑1 (MQ=255)                                                                                 ccGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGttttt                                                                                                                        >  4:105195/1‑95 (MQ=255)                                                                                 ccGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGttttt                                                                                                                        <  3:105195/95‑1 (MQ=255)                                                                                       cTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGATACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑Cga                                                           <  4:107735/149‑1 (MQ=255)                                                                                           cTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAccagctgaaagtcagccccggcgagttctcgatgctgctgggctacacccaggcttcgttcaaccgggcatcgccgcagttgctgctgtatt                                                        <  5:226630‑M2/149‑93 (MQ=255)                                                                                            tttCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAccagctgaaagtcagccccggcgagttctcgatgctgctgggctacacccaggcttcgttcaaccgggcatcgccgcagttgctgctgtattc                                                       <  1:43480‑M2/149‑94 (MQ=255)                                                                                              tCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGAccagctgaaagtcagccccggcgagttctcgatgctgctgggctacacccaggcttcgttcaaccgggcatcgccgcagttgctgctgtattc                                                       >  2:43480‑M2/1‑54 (MQ=255)                                                                                               cAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAgg                                                    <  4:33767/148‑1 (MQ=255)                                                                                                 gCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGCCCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAAAAGCCAGCGGTGCATGGCGCAGGAGTAGCCGAGCCTCAGTAGCTT‑AGAGAGCAGGaaa                                                 >  6:202701/1‑149 (MQ=255)                                                                                                     gACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACCGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGc                                             >  2:41224/1‑149 (MQ=255)                                                                                                               gTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCa                                                                                              >  5:47163/1‑91 (MQ=255)                                                                                                               gTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCa                                                                                              <  6:47163/91‑1 (MQ=255)                                                                                                                tGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCg                                  >  4:76751/1‑149 (MQ=255)                                                                                                                           aTGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAg                       >  3:257206/1‑149 (MQ=255)                                                                                                                               ccATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAATTTACAAGAGCAGGAAATTGCCGACACTGCCGAGCAGAATCAGcc                     >  1:123594/1‑148 (MQ=255)                                                                                                                                      cAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGc            >  8:322298/1‑149 (MQ=255)                                                                                                                                       aGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGcc           >  4:172518/1‑149 (MQ=255)                                                                                                                                           ccAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGCCCATg       >  5:62152/1‑149 (MQ=255)                                                                                                                                            cAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCAAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGAAGGAAATTGCCTTCAATGCCGAGCAGGATCAGCCCATGCACGCCCATGc      >  5:366345/1‑149 (MQ=255)                                                                                                                                               gCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGcc                                            >  7:112352/1‑108 (MQ=255)                                                                                                                                               gCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGcc                                            <  8:112352/108‑1 (MQ=255)                                                                                                                                                ccGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGCCCATGCccag  >  3:346820/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCACGGCCGAATACAGCAGCAACTGCGGCGATGCCCGGTTGAACGAAGCCTGGGTGTAGCCCAGCAGCATCGAGAACTCGCCGGGGCTGACTTTCAGCTGGACGAACTGGGTGAACGTGGCCATGACCATGGTCAGCACCAGGCCGACCAGCAGCAGGAAGTACACGTTGTTTTTGCCGTCACGAAACAGCCAGCGGTGCAGGGCCCAGGAGTAGCCGAGCATCAGTAGCAT‑CGAGAGCAGGAAATTGCCGTCACTGCCGAGCAGGATCAGCCCCTGCACGCCCATGCCCAG  >  NC_002947/2963391‑2963682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.