New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3550919 =	42 (0.710)	3 (0.050)	3/244	NT	7.0%	coding (71/957 nt)	PP_3135	glycosyl transferase
	?	NC_002947	3551004 =	41 (0.750)					coding (156/957 nt)	PP_3135	glycosyl transferase

GCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTGCCGCCGACTCGCTGCAAA  >  NC_002947/3550856‑3551152                                                                                                                                                     |                                                                                                                                                     gCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGCTGCAGCGCATg                                                                                                                                                      >  7:40576/1‑149 (MQ=255)                  aTGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGAGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTACCTCGATGACTCGTTGCAGCGCATGGCCCAGGTGTGcacc                                                                                                                                       >  2:67641/1‑147 (MQ=255)                            aCTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCTCGGGGCAcacctg                                                                                                                           <  7:124009/149‑6 (MQ=255)                            aCTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCActgctg                                                                                                                           <  6:3377/149‑1 (MQ=255)                                    aCCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGcaa                                                                                                                   >  4:140167/1‑149 (MQ=255)                                         tGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAg                                                                                                               >  4:303123/1‑148 (MQ=255)                                           gACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCa                                                                                                             <  3:303123/148‑1 (MQ=255)                                                ttGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAAc                                                                                                         <  7:323577/147‑1 (MQ=255)                                                   cAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTgg                                                                                                     <  4:294620/148‑1 (MQ=255)                                                      ccGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGttt                                                                                                 >  6:369703/1‑149 (MQ=255)                                                      ccGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGttt                                                                                                 >  2:183746/1‑149 (MQ=255)                                                        gATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCg                                                                                               <  8:10311/149‑1 (MQ=255)                                                        gATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCg                                                                                               <  7:23400/149‑1 (MQ=255)                                                        gATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCg                                                                                               >  5:19430/1‑149 (MQ=255)                                                               gATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCggg                                                                                         <  6:19430/148‑1 (MQ=255)                                                               gATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGc                                                                                        >  2:21069/1‑149 (MQ=255)                                                                atgcgctgcaccgagtcatcgcgcgaggcattgtcgaccaccaggtaactggccagccgctcgctgtcggcccggcgcagcgcatGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGACCGTGGGTTTCGGCCGGGc                                                                                        >  2:14963‑M2/86‑148 (MQ=255)                                                                    gctgcaccgagtcatcgcgcgaggcattgtcgaccaccaggtaactggccagccgctcgctgtcggcccggcgcagcgcatGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCcaac                                                                                    >  4:235234‑M2/82‑148 (MQ=255)                                                                      TGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCaacaac                                                                                 <  2:348913‑M1/149‑1 (MQ=255)                                                                        cgacGGGCCGACATCGAGCGGCTGGCCAGTTACCTGGTTGTCGACAATGCCTCACGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCaacaac                                                                                 <  1:67641/144‑1 (MQ=255)                                                                           cgagtcatcgcgcgaggcattgtcgaccaccaggtaactggccagccgctcgctgtcggcccggcgcagcgcatGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAgtt                                                                            <  3:235234‑M2/75‑1 (MQ=255)                                                                              gCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAgttgtt                                                                         >  3:254116/1‑149 (MQ=255)                                                                               ccGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGttgttg                                                                        <  6:349133/149‑1 (MQ=255)                                                                                cGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTgg                                                                       >  3:3424/1‑149 (MQ=255)                                                                                 gACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGgc                                                                      >  2:165773/1‑149 (MQ=255)                                                                                             cTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAggg                                                          <  4:254116/149‑1 (MQ=255)                                                                                                gCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCaa                                                       <  8:40576/149‑1 (MQ=255)                                                                                                  cAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCaa                                                             >  1:300266/1‑141 (MQ=255)                                                                                                  cAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCaa                                                             <  2:300266/141‑1 (MQ=255)                                                                                                    gTTACCTGGTGGTCGACAATGCCTCGCTCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGTGGCACTGCGGCTGAGCAACAAGCAGAACGTGGGTGTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTAt                                                   <  5:80472/149‑1 (MQ=255)                                                                                                    gTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTAt                                                   <  1:21069/149‑1 (MQ=255)                                                                                                        ccTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCt                                               >  2:143467/1‑149 (MQ=255)                                                                                                               gtCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTgctgct                                        >  1:255546/1‑149 (MQ=255)                                                                                                                 cGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTc                                       >  5:189962/1‑148 (MQ=255)                                                                                                                 cGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCa                                      <  3:361489/149‑1 (MQ=255)                                                                                                                  gACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCaa                                     <  5:369703/149‑1 (MQ=255)                                                                                                                         ccTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGAt                              <  3:140167/149‑1 (MQ=255)                                                                                                                          cTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTgctgct                                        >  7:299144/1‑138 (MQ=255)                                                                                                                          cTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATg                             >  1:302558/1‑149 (MQ=255)                                                                                                                          cTCGCGCGAGGACGCGGGGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTgctgct                                        <  8:299144/138‑1 (MQ=255)                                                                                                                           tCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGc                            >  2:211182/1‑149 (MQ=255)                                                                                                                                cgATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCg                       >  7:20101/1‑149 (MQ=255)                                                                                                                                 gATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCAc                                                                  <  7:24717/105‑1 (MQ=255)                                                                                                                                 gATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCAc                                                                  >  8:24717/1‑105 (MQ=255)                                                                                                                                   tGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTg                    >  6:97399/1‑149 (MQ=255)                                                                                                                                     aCTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTgcc                  <  1:348913/149‑1 (MQ=255)                                                                                                                                                  catGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTGCCGCCGACTCGCTg      >  2:233954‑M2/4‑148 (MQ=255)                                                                                                                                                     ggCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTGCCGCCGACTCGCTGCagg  >  3:49313/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCGCCGGGCCGACAGCGAGCGGCTGGCCAGTTACCTGGTGGTCGACAATGCCTCGCGCGATGACTCGGTGCAGCGCATGGCCCAGGTGTGCCCCGAGGCACTGCTGCTGAGCAACAAGCAGAACGTGGGTTTCGGCCGGGCCAACAACCAGTTGTTGGCGCACCTCAAGGGCAAGTATGCCTTGCTGCTCAATACCGATGCCTTCGTTGCCGCCGACTCGCTGCAAA  >  NC_002947/3550856‑3551152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.