New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4585270 =	51 (0.870)	3 (0.050)	3/250	NT	6.4%	coding (314/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4585326 =	39 (0.690)					coding (258/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

TCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGG  >  NC_002947/4585178‑4585474                                                                                                                                                     |                                                                                                                                                     acgaccgcctggcggtgatgctcaactggcgccaggcccacagccggcgctggcattgcgtgccgatgcagtcggcgggcaacgacctgtggCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGc                                                                                                                                                      >  1:9994‑M1/93‑149 (MQ=255)    accgcctggcggtgatgctcaactggcgccaggcccacagccggcgctggcattgcgtgccgatgcagtcggcgggcaacgacctgtggCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCca                                                                                                                                                    <  4:296058‑M1/59‑1 (MQ=255)    aGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCAAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGATCGGTGGGGGTGATTTCGGCCAGcaa                                                                                                                                                    >  2:273446/1‑146 (MQ=255)      cgcctggcggtgatgctcaactggcgccaggcccacagccggcgctggcattgcgtgccgatgcagtcggcgggcaacgacctgtggCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAg                                                                                                                                                 >  3:296058‑M1/88‑149 (MQ=255)                cctggtccagtgTTACCTAGCCGCCGGCGTGGGACTTCATCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGcc                                                                                                                                        <  6:259360/143‑1 (MQ=255)                ccagttccagttTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGATGCAATTGGTTGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTg                                                                                                                                          <  1:302841/146‑1 (MQ=255)                          ttttGCCTCGACGGCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGGCGATCCAGGCCGCGAGACTGAACCGTTGCGGGCCCCCCACGGTGGGGGTGATTGCGGCGAGCCACAGGTCGTTGCCCGCGGagagca                                                                                                                             >  2:177344/1‑144 (MQ=255)                                cTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCcac                                                                                                                                                   >  6:323558/1‑121 (MQ=255)                                cTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCcac                                                                                                                                                   <  5:323558/121‑1 (MQ=255)                                cTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGc                                                                                                                        >  5:19987/1‑148 (MQ=255)                                cTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGc                                                                                                                        <  6:19987/148‑1 (MQ=255)                                 tCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCCGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCAc                                                                                                                      >  5:61017/1‑149 (MQ=255)                                 tCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCAc                                                                                                                      >  6:290440/1‑149 (MQ=255)                                     cGCCGGCGTGGTACTTCTTGTCCATATCGGTGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCTGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCaa                                                                                                                  <  5:378661/149‑1 (MQ=255)                                      gCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAAt                                                                                                                 <  1:68423/149‑1 (MQ=255)                                      gCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAAt                                                                                                                 <  7:166335/149‑1 (MQ=255)                                         ggCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGcc                                                                                                              >  4:42091/1‑149 (MQ=255)                                            gTGGTACTTCTTCTCCAGATCGTGGCAATAGGGGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAgc                                                                                                           <  4:167288/149‑1 (MQ=255)                                                  cttcttCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGc                                                                                                               >  3:72015/1‑139 (MQ=255)                                                  cttcttCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGc                                                                                                               <  4:72015/139‑1 (MQ=255)                                                        ctcCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCtgtg                                                                                                 <  2:79335/147‑1 (MQ=255)                                                        ctcCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTgg                                                                                                <  7:225611/148‑1 (MQ=255)                                                         tcCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTAGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGc                                                                                              >  3:323473/1‑149 (MQ=255)                                                                     cactAGGTGGGAAACGGGTCGATCCAGGCCTCGATACTGAAGCGGTGCGGGCCCTGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGtt                                                                                  <  1:273446/146‑1 (MQ=255)                                                                     cAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGtt                                                                                  <  4:234491/149‑1 (MQ=255)                                                                      aaTAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGtt                                                                                  >  5:197023/1‑148 (MQ=255)                                                                       aTAGGTGGCAATCGGGGCGATCCAGGCGTCGATACTGAACCGGTGCGGGCCCAGCTCTGTGGGGGTGAATTCGGCCTGGCACTGGTAGTTGCCCGCCGACTTCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGa                                                                                <  1:177344/149‑1 (MQ=255)                                                                                aaaCGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTAGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCAGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTCGAGCATCACCg                                                                       >  5:146275/1‑149 (MQ=255)                                                                                  aCGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAACTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGc                                                                      >  4:247596/1‑148 (MQ=255)                                                                                    gggTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAg                                                                   <  6:96743/149‑1 (MQ=255)                                                                                       ctgtggcaggccgaattcacccccaccgagctgggcccgcaccggttcagtatcgaggcctgCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCg                                                                >  3:296058‑M2/63‑149 (MQ=255)                                                                                          tggcaggccgaattcacccccaccgagctgggcccgcaccggttcagtatcgaggcctgCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGt                                                              <  4:296058‑M2/89‑1 (MQ=255)                                                                                           tCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCg                                                            >  4:345567/1‑149 (MQ=255)                                                                                            gcaggccgaattcacccccaccgagctgggcccgcaccggttcagtatcgaggcctgCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGt                                                           >  1:9994‑M2/58‑149 (MQ=255)                                                                                             CAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTg                                                          >  3:42091‑M1/1‑149 (MQ=255)                                                                                             CAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTg                                                          >  4:323473‑M1/1‑149 (MQ=255)                                                                                               GGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGc                                                        <  3:110023‑M1/149‑1 (MQ=255)                                                                                                  CTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTgg                                                                                          <  2:273796‑M1/112‑1 (MQ=255)                                                                                                  CTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTgg                                                                                          >  1:273796‑M1/1‑112 (MQ=255)                                                                                                            aaCCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGc                                           >  4:11744/1‑149 (MQ=255)                                                                                                                 gTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTgg                                      <  3:11744/149‑1 (MQ=255)                                                                                                                 gTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTgg                                      <  7:157704/149‑1 (MQ=255)                                                                                                                    cGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGc                                   >  4:135767/1‑149 (MQ=255)                                                                                                                       gCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGa                                <  4:110023/149‑1 (MQ=255)                                                                                                                         cctgCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTg                                       <  3:164919/137‑1 (MQ=255)                                                                                                                         ccAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTg                                       >  4:164919/1‑140 (MQ=255)                                                                                                                            gCTAGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGc                            >  8:64108/1‑148 (MQ=255)                                                                                                                             cTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCca                          >  7:118784/1‑149 (MQ=255)                                                                                                                               cgggtggggTGATTTCGGCGGGGCTGAGGTCGGGGCCGGCGGACTGCATCTGCACTGAATGCCAGCGCCGTCTGTGGGCCTGGCGCCAGTTGAGGATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCGTTGGTGCTGACGGCcac                         <  8:338387/143‑1 (MQ=255)                                                                                                                                ggTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCcac                         <  8:23995/147‑1 (MQ=255)                                                                                                                                ggTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCca                          >  2:258262/1‑146 (MQ=255)                                                                                                                                ggTGGGGGGGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCcaca                        <  1:258262/148‑1 (MQ=255)                                                                                                                                      ggTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGc                 >  8:225730/1‑149 (MQ=255)                                                                                                                                               ggcctgCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACgg        >  8:176354‑M2/7‑149 (MQ=255)                                                                                                                                               ggcctgCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACg         <  5:290440‑M2/142‑1 (MQ=255)                                                                                                                                                     ccACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTgg  <  6:61017/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTTCTCCAGATCGTGGCAATAGGTGGCAAACGGGTCGATCCAGGCCTCGATACTGAACCGGTGCGGGCCCAGCTCGGTGGGGGTGAATTCGGCCTGCCACAGGTCGTTGCCCGCCGACTGCATCGGCACGCAATGCCAGCGCCGGCTGTGGGCCTGGCGCCAGTTGAGCATCACCGCCAGGCGGTCGTGGCCGTCGCTGTAGGCCTTGGTGCTGACGGCCACAGGCTGGCCGCTGACGGCCTTGG  >  NC_002947/4585178‑4585474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.