New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1930398	11 (0.330)	6 (0.210)	6/246	2.5	38.2%	intergenic (‑65/+40)	PP_1729/apeB	hypothetical protein/M18 family aminopeptidase
	?	NC_002947	= 1930414	10 (0.350)					intergenic (‑81/+24)	PP_1729/apeB	hypothetical protein/M18 family aminopeptidase

AAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1930233‑1930398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagcaggcgcggcctgttcgCGGCGGTTCGACGCCTCGAACAGGCCGCGCCTGCTTAAACGTGCTCAAGGTCAATCACGCCTCGTTGGTCAAGCGCTATGCTTGTTACATGGCCCCACTGCAAAAGGATTGCTGTCCATGTCCCCGTTCCTGTCACTGTTCGTCCCG  <  NC_002947/1930414‑1930268                                                                                                                                                                                                                                                                                                                           AAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGAAATGGAAAGCAATCCTTTTGCAGTGGGTCCATGTAACAAGCATAGCTCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAA                                                                                                                                                                       >  1:61346/1‑148          GTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCG                                                                                                                                                              >  3:89897/1‑148           TCAGCAGCATCAGGAACAGGAACAACGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGG                                                                                                                                                             >  1:81730/1‑148              GCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCT                                                                                                                                                          <  4:89897/148‑1                       GGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGC                                                                                                                                                 >  1:69335/1‑148                                       GACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGCGGTTCGACGCCTCGAA                                                                                                                                 <  2:69335/148‑1                                        ACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGCGGTTCGACGCCTCGAAC                                                                                                                                <  6:62815/148‑1                                         CGAACAGTGACAGGAACGGGGACATGGACCGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGCGGTTCGACGCCTCGAACA                                                                                                                               <  1:21164/148‑1                                                                                                           GCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGCGGTTCGACGCCTCGAACA                                                                                                                               >  1:172140/1‑82                                                                                                            CGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGCGGCGGTTCGACGCCTCGAACAG                                                                                                                              <  2:172140/82‑1                                                                                                                                                              GCCTGTTCGCGGCGGTTCGACGCCTCGAACAGGCCGCGCCTGCTTAAACGTGCTCAAGGTCAATCACGCCTCGTTGGTCAAGCGCTATGCTTGTTACATGGCCCCACTGCAAAAGGATTGCTGTCCATGTCCCCGTTCCTGTCACTGT          >  8:111664/1‑148                                                                                                                                                                      GCGGCGGTTCGACGCCTCGAACAGGCCGCGCCTGCTTAAACGTGCTCAAGGTCAATCACGCCTCGTTGGTCAAGCGCTATGCTTGTTACATGGCCCCACTGCAAAAGGATTGCTGTCCATGTCCCCGTTCCTGTCACTGTTCGTCCCG  <  5:157397/148‑1                                                                                                                                                                                                                                                                                                                           AAGCCGATGGTCAGCAGCATCAGGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1930233‑1930398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagcaggcgcggcctgttcgCGGCGGTTCGACGCCTCGAACAGGCCGCGCCTGCTTAAACGTGCTCAAGGTCAATCACGCCTCGTTGGTCAAGCGCTATGCTTGTTACATGGCCCCACTGCAAAAGGATTGCTGTCCATGTCCCCGTTCCTGTCACTGTTCGTCCCG  <  NC_002947/1930414‑1930268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.