| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1930398 | 11 (0.330) | 6 (0.210) | 6/246 | 2.5 | 38.2% | intergenic (‑65/+40) | PP_1729/apeB | hypothetical protein/M18 family aminopeptidase |
| ? | NC_002947 | = 1930414 | 10 (0.350) | intergenic (‑81/+24) | PP_1729/apeB | hypothetical protein/M18 family aminopeptidase | |||||
GGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGAGTGCATGGCAAAGGTCGGCAA > NC_002947/1930255‑1930545 | ggaacaggaacaCCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggc > 1:69335‑M1/1‑144 (MQ=255) aacaggaacaCCGGGACGAACAGTGACAGTAACGGGGACATGGACAGCACTACTTTTGCAGTTGTGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGt < 8:81053/148‑1 (MQ=255) gaacaCCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAAc > 4:166154/1‑148 (MQ=255) cGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGc < 5:157397‑M2/148‑2 (MQ=255) gACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggcggttcgacgcctcgaa < 2:69335‑M1/148‑21 (MQ=255) aCGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggcggttcgacgcctcgaac < 6:62815‑M1/148‑22 (MQ=255) cGAACAGTGACAGGAACGGGGACATGGACCGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggcggttcgacgcctcgaaca < 1:21164‑M1/148‑23 (MQ=255) aCAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGcgaacaggc > 8:111664‑M2/1‑139 (MQ=255) ggACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCa > 7:36262/1‑148 (MQ=255) cAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTcgc > 6:171265/1‑148 (MQ=255) aaGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCAGTTAGCGGCGGCGAACCCCCGCGCACACGCCCCCCCAGCGTACCAAAAAGCCCCTCGCGGCGACCGTAGAACGCGGTCACTAccat > 4:137483/1‑146 (MQ=255) gcgcTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggcggttcgacgcctcgaaca > 1:172140‑M1/1‑60 (MQ=255) cggtggcccACCGCGGGGTGATGCACCTTGCGCCCGTTAACGCCGGCGCGGCCTGTGCGCGGCGGCGACCCGCCGCCAACTGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGt < 3:166154/141‑1 (MQ=255) cgcTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGcggcggttcgacgcctcgaacag < 2:172140‑M1/82‑24 (MQ=255) cAACGTGGCTTTTTTGACCTTTAGCACGTTTATGCTGGCGCGGCCTGTTCGCGGCGGCTAACCGCCGCTAACTGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAgg < 8:36262/148‑1 (MQ=255) tttttgaccttgaccACTTTTAAGCTGGCGCGGCTTGTTCTCGGCGTCTAACCGCCGCTAACTGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGc < 2:13655/145‑1 (MQ=255) aTTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGcc > 6:81417/1‑147 (MQ=255) aGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGAGt < 5:171265/147‑1 (MQ=255) aGGCGCGGCCGGTTCGAGGCGTCGAACCGCCGCTAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGAGTGCAt < 6:85781/148‑1 (MQ=255) gCCTGTTCGcggcggttcgacgcctcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgctatgcttgttacatggccccactgcaaaaggattgctgtccatgtccccgttcctgtcactgt > 8:111664‑M1/1‑9 (MQ=255) cTGTTCGAGGCGTCGAACCGCCGcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcg < 2:172140‑M2/82‑60 (MQ=255) tGTTCGAGGCGTCGAACCGCCGcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgctatgcttgttacatggccccactgcaaaaggattgcggtccatgtccccgttcctgtcactgttcg < 1:21164‑M2/148‑127 (MQ=255) tGTTCGAGGCGTCGAACCGCCGcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgc > 1:172140‑M2/1‑22 (MQ=255) gTTCGAGGCGTCGAACCGCCGcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgctatgcttgttacatggccccactgcaaaaggattgctgtccatgtccccgttcctgtcactgttcgt < 6:62815‑M2/148‑128 (MQ=255) ttCGAGGCGTCGAACCGCCGcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgctatgcttgttacatggccccactgcaaaaggattgctgtccatgtccccgttcctgtcactgttcgtc < 2:69335‑M2/148‑129 (MQ=255) gcggcggttcgacgcctcgaacaggccgcgcctgcttaaacgtgctcaaggtcaatcacgcctcgttggtcaagcgctatgcttgttacatggccccactgcaaaaggattgctgtccatgtccccgttcctgtcactgttcgtcccg < 5:157397‑M1/148‑148 (MQ=255) | GGAACAGGAACACCGGGACGAACAGTGACAGGAACGGGGACATGGACAGCAATCCTTTTGCAGTGGGGCCATGTAACAAGCATAGCGCTTGACCAACGAGGCGTGATTGACCTTGAGCACGTTTAAGCAGGCGCGGCCTGTTCGAGGCGTCGAACCGCCGCGAACAGGCCGCGCCTGCTTACATCAAGGCAGCTCGCGGCTACGGTAGAACGCGGTCAGTACCTTCACCAGGTGCGCCAGGTCATGGCTGCCACACAGCTCGCGAATGGAGTGCATGGCAAAGGTCGGCAA > NC_002947/1930255‑1930545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |