New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	496732 =	57 (0.960)	4 (0.070)	4/242	NT	6.7%	coding (604/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	496774 =	57 (1.020)					coding (646/2388 nt)	PP_0409	two‑component system sensor histidine kinase

CCTTGGCCGGCACGGCCTGCAAGCCACGTTCAAGTACATCGGCCAGCATCGGCCAGTCGCGCCGCGAACCGATACGCAACAGTTGCGGCAGGCCAATATCGCCGACCACCGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/496885‑496732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagctgGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCC  >  NC_002947/496774‑496919                                                                                                                                                                                                                                                                                                              CCTTGGCCGGCACGGCCTGCAAGCCACGTTCAAGTACATCGGCCAGCATCGGCCAGTCGCGCCGCGAACCGATACGCAACAGTTGCGGCAGGCCAATATCGCCGACCACCGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCT                                                                                                                                                          >  5:205550/1‑148  CTTGGCCGGCACGGCCTGCAAGCCACGTTCAAGTACATCGGCCAGCATCGGCCAGTCGCGCCGCGAACCGATACGCAACAGTTGCGGCAGGCCAATATCGCCGACCACCGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGA                                                                                                                                                        <  5:76170/149‑1  CTTGGCCGGCACGGCCTGCAAGCCACGTTCAAGTACATCGGCCAGCATCGGCCAGTCGCGCCGCGAACCGATACGCAACAGTTGCGGCAGGCCAATATCGCCGACCACCGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGA                                                                                                                                                        <  7:137329/149‑1                                                                                                              CGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGC                                                                                       <  5:12314/106‑1                                                                                                              CGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGC                                                                                       >  6:12314/1‑106                                                                                                               GCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATAGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCG                                           >  6:183910/1‑149                                                                                                                CCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGG                                          >  1:256516/1‑149                                                                                                                                                      AGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAG    <  4:50023/149‑1                                                                                                                                                      AGCTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAG    >  7:296018/1‑149                                                                                                                                                        CTGGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCC  <  2:256516/149‑1                                                                                                                                                                                                                                                                                                              CCTTGGCCGGCACGGCCTGCAAGCCACGTTCAAGTACATCGGCCAGCATCGGCCAGTCGCGCCGCGAACCGATACGCAACAGTTGCGGCAGGCCAATATCGCCGACCACCGCCAGCTCACCGAACTCGCTCTCGCGCGACAGGCGGCTGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/496885‑496732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagctgGCGGTGGTCGGCGATATTGGCCTGCCGCAACTGTTGCGTATCGGTTCGCGGCGCGACTGGCCGATGCTGGCCGATGTACTTGAACGTGGCTTGCAGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCC  >  NC_002947/496774‑496919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.