New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	620042 =	51 (0.860)	3 (0.050)	3/238	NT	7.1%	coding (648/693 nt)	PP_0534	transcriptional regulator PfeR
	?	NC_002947	620117 =	31 (0.560)					coding (573/693 nt)	PP_0534	transcriptional regulator PfeR

CCACCCCGACGAAGCGTTGAGCAAGCCCTTCCTGTACCAGACCGTGCTGCACAGGGCCTATACCCGACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/620192‑620042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAAC  >  NC_002947/620117‑620260                                                                                                                                                                                                                                                                                                         CCACCCCGACGAAGCGTTGAGCAAGCCCTTCCTGTACCAGACCGTGCTGCACAGGGCCTATACCCGACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGG                                                                                                                                                    >  5:355269/1‑149   ACCCCGACGAAGCGTTGAGCAAGCCCTTCCTGTACCAGACCGTGCTGCACAGGGCCTATACCCGACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCC                                                                                                                                                  <  5:67572/149‑1                                                                          CGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCCCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCCGCACGGTCGGGTAGAGGAAGGGCTGCCAAAACGCATCGTCcg                                                                           >  1:320797/1‑147                                                                             GGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGACTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCG                                                                            <  3:41110/145‑1                                                                             GGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGACTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCG                                                                            >  4:41110/1‑145                                                                                                                                                TCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCA                                                      >  5:40718/1‑100                                                                                                                                                TCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCA                                                      <  6:40718/100‑1                                                                                                                                                 CCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGAa     >  5:384824/1‑147                                                                                                                                                  CAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAA   >  4:166829/1‑149                                                                                                                                                   AGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAAC  <  5:205601/149‑1                                                                                                                                                                                                                                                                                                         CCACCCCGACGAAGCGTTGAGCAAGCCCTTCCTGTACCAGACCGTGCTGCACAGGGCCTATACCCGACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/620192‑620042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAAC  >  NC_002947/620117‑620260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.