New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	620042 =	51 (0.860)	3 (0.050)	3/238	NT	7.1%	coding (648/693 nt)	PP_0534	transcriptional regulator PfeR
	?	NC_002947	620117 =	31 (0.560)					coding (573/693 nt)	PP_0534	transcriptional regulator PfeR

TTTCCACAGCAACGGGTGGCGACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAACGTCCT  >  NC_002947/619971‑620265                                                                                                                                                   |                                                                                                                                                     cggacgatgcgttttggcagcccttcctctacccgaccgtgcggcacagggcctatacccgactggaccgaGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGGGGCGCAGGTTGCACACATGCACATCCAGGCCTCg                                                                                                                                                    >  1:320797‑M1/72‑149 (MQ=255)           aaCGGGTGGCGACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCgg                                                                                                                                          <  3:327217/149‑1 (MQ=255)                gTGGCGACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGta                                                                                                                                       >  7:274451/1‑147 (MQ=255)                 tGGCGACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAg                                                                                                                                    <  5:211378/149‑1 (MQ=255)                     gACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGccc                                                                                                                                >  2:118879/1‑149 (MQ=255)                     gACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGccc                                                                                                                                >  1:249083/1‑149 (MQ=255)                         cATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACACGCACATCCAGGCCTCGGTCCAGTCGGGTATAgg                                                                                                                                   >  4:32339/1‑142 (MQ=255)                         cATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACACGCACATCCAGGCCTCGGTCCAGTCGGGTATAgg                                                                                                                                   <  3:32339/142‑1 (MQ=255)                           tCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTgca                                                                                                                          <  5:122959/149‑1 (MQ=255)                                    cTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCt                                                                                                                 >  4:32345/1‑149 (MQ=255)                                       cGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTgg                                                                                                               <  3:258326/148‑1 (MQ=255)                                           cggagcAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAg                                                                                                          <  3:220328/144‑1 (MQ=255)                                               ccAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAg                                                                                                      <  2:249083/149‑1 (MQ=255)                                                cAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAgg                                                                                                     >  2:49682/1‑149 (MQ=255)                                                  ggATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGc                                                                                                   <  6:327740/149‑1 (MQ=255)                                                  ggATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAAGCCCTGTGCAGCACGGTCTg                                                                                                                <  7:231020/136‑1 (MQ=255)                                                  ggATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAAGCCCTGTGCAGCACGGTCTg                                                                                                                >  8:231020/1‑136 (MQ=255)                                                   gATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGc                                                                                                   >  4:278837/1‑148 (MQ=255)                                                   gATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGc                                                                                                   <  3:278837/148‑1 (MQ=255)                                                              ggCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACg                                                                                         <  3:32345/147‑1 (MQ=255)                                                                ccACGCACGTCCTGGATCTGCAGGTGCTGGGCATTGATGTCTGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCt                                                                                                                                                      <  1:8212/84‑1 (MQ=255)                                                                ccACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACAAATGCACATCCAGGCCt                                                                                                                                                      >  2:8212/1‑84 (MQ=255)                                                                     cgaggcctggatgtgcatgtgtgcaacctgcgccccaaactggccgacatcaatgcccagcacctgcagatccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCCGCACGGTCGGGTAGAGGAAGGGCTGCCAAAACGcatcgtccg                                                                                >  1:320797‑M2/79‑147 (MQ=255)                                                                      acgGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGGACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCggg                                                                               >  3:287824/1‑149 (MQ=255)                                                                        ggcctggatgtgcatgtgtgcaacctgcgccgcaaactggccgacatcaatgcccagcacctgcagatccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGACTGGTACAGGAAGGGCTTGCTCAACGCTtcgtcg                                                                                 <  3:41110‑M2/70‑1 (MQ=255)                                                                        ggcctggatgtgcatgtgtgcaacctgcgccgcaaactggccgacatcaatgcccagcacctgcagatccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGACTGGTACAGGAAGGGCTTGCTCAACGCTtcgtcg                                                                                 >  4:41110‑M2/76‑145 (MQ=255)                                                                        GGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGt                                                                             <  5:67572‑M1/149‑1 (MQ=255)                                                                          CCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTgg                                                                           >  5:355269‑M1/1‑149 (MQ=255)                                                                                    cAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCcagcag                                                                   <  8:274451/147‑1 (MQ=255)                                                                                        tGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGAc                                                             <  3:172112/149‑1 (MQ=255)                                                                                                    aTGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGaa                                                 >  6:205601/1‑149 (MQ=255)                                                                                                            cAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTTTAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGGGTGACCAGGAAGCGGAAGTCGGAAg                                         >  8:237855/1‑149 (MQ=255)                                                                                                             aGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGAAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCGAGCAGCGTGACCAGCAAGCGGAATTCGGAAGc                                        >  3:50642/1‑149 (MQ=255)                                                                                                                  gcggcgCTGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCGGCACGGTGTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGACAGCAGCGTGAACAGCAAGCGGAATTCGGAAGcagggt                                   >  6:299748/1‑144 (MQ=255)                                                                                                                     gcgcAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGc                                >  7:224066/1‑149 (MQ=255)                                                                                                                        cAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAg                             >  7:300791/1‑149 (MQ=255)                                                                                                                                acacaTGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGAc                                                             >  3:14598/1‑109 (MQ=255)                                                                                                                                acacaTGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGAc                                                             <  4:14598/109‑1 (MQ=255)                                                                                                                                    aTGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGt                 >  5:320764/1‑149 (MQ=255)                                                                                                                                      gCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTGAGGCCAGCGGCGTTGCCGTtg               >  6:278209/1‑149 (MQ=255)                                                                                                                                           tccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCa                                                           <  6:40718‑M2/92‑1 (MQ=255)                                                                                                                                           tccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCa                                                           >  5:40718‑M2/9‑100 (MQ=255)                                                                                                                                            ccaggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGgaa          >  5:384824‑M2/8‑147 (MQ=255)                                                                                                                                             caggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATaa        >  4:166829‑M2/7‑149 (MQ=255)                                                                                                                                              aggccTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAAc       <  5:205601‑M2/144‑1 (MQ=255)                                                                                                                                                   tCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAACGTCCt  >  7:354294/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TTTCCACAGCAACGGGTGGCGACGCATCAGGCCTGCTCCGTGTCGACCAGGATGTACCCTTGGCCACGCACGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGGGCCAGCAGCGTGACCAGCAAGCGGAATTCGGAAGCGGTAAGGCCAGCGGCGTTGCCGTTGTGGATAACGTCCT  >  NC_002947/619971‑620265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.