New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1357142	58 (0.980)	3 (0.050)	3/244	NT	5.0%	coding (323/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357169	58 (1.030)					coding (350/1608 nt)	PP_1182	sensor histidine kinase

CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1356991‑1357142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGATC  <  NC_002947/1357169‑1357023                                                                                                                                                                                                                                                                                                             CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGG                                                                                                                                                        >  2:338466/1‑149 CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGG                                                                                                                                                        >  3:291661/1‑149 CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCACTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTG                                                                                                                                                         <  5:365464/148‑1 CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCGGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGG                                                                                                                                                        >  5:33276/1‑149    AATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC                                                                                                                                                     <  4:204524/149‑1     ATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC                                                                                                                                                     <  5:179155/148‑1                                  ATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGG                                                                                                                       >  5:192017/1‑149                                       GGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCA                                                                                                                    <  6:158710/147‑1                                        GAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGGGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATC                                                                                                                 <  6:192017/149‑1                                                                                                                                                      CCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT   <  2:48422/149‑1                                                                                                                                                       CCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGATC  <  7:305654/149‑1                                                                                                                                                       CCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT   >  4:127253/1‑148                                                                                                                                                       CCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGC                                 <  3:162476/118‑1                                                                                                                                                       CCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGC                                 >  4:162476/1‑118                                                                                                                                                                                                                                                                                                             CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1356991‑1357142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGATC  <  NC_002947/1357169‑1357023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.