New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1357142	58 (0.980)	3 (0.050)	3/244	NT	5.0%	coding (323/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357169	58 (1.030)					coding (350/1608 nt)	PP_1182	sensor histidine kinase

GATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCA  >  NC_002947/1357023‑1357310                                                                                                                                                   |                                                                                                                                              gATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgg                                                                                                                                             <  7:305654‑M2/149‑3 (MQ=255)  aTCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTggg                                                                                                                                            <  2:48422‑M2/149‑4 (MQ=255)  aTCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgg                                                                                                                                             >  4:127253‑M2/1‑146 (MQ=255)       ggAACGCCTGCTTGGCGTGCAGTTGGCGCTGTAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAgg                                                                                                                                       <  8:39323/149‑1 (MQ=255)       ggAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAg                                                                                                                                        >  7:197065/1‑148 (MQ=255)       ggAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAg                                                                                                                                        >  2:285704/1‑148 (MQ=255)         aaCGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGaa                                                                                                                                     <  5:158555/149‑1 (MQ=255)          aCGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGGCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAg                                                                                                                                    <  7:111423/149‑1 (MQ=255)           cGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCATGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGa                                                                                                                                   <  2:146152/149‑1 (MQ=255)            gCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGAc                                                                                                                                  <  4:358363/149‑1 (MQ=255)                 cTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGAt                                                                                                                             <  3:146348/149‑1 (MQ=255)                     gCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCt                                                                                                                          <  6:321162/148‑1 (MQ=255)                     gCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTg                                                                                                                         <  7:30958/149‑1 (MQ=255)                     gCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTg                                                                                                                         <  3:226288/149‑1 (MQ=255)                        tGCAGTTGGCGCTGCAGCCGATGAGCGCAGGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCACAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTc                                                                                                                      <  5:255084/149‑1 (MQ=255)                            gTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTcgcg                                                                                                                   >  4:289311/1‑148 (MQ=255)                              tGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCa                                                                                                                 <  6:119608/148‑1 (MQ=255)                               ggCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTcgcg                                                                                                                   >  2:370498/1‑145 (MQ=255)                                gcgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgg                                                                                                                                             <  3:162476‑M2/118‑3 (MQ=255)                                gcgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgg                                                                                                                                             >  4:162476‑M2/1‑116 (MQ=255)                                gcgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGAt                                                                                                              <  7:135200/149‑1 (MQ=255)                                 cgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATc                                                                                                             <  4:291661/149‑1 (MQ=255)                                   cTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCa                                                                                                            >  8:222681/1‑148 (MQ=255)                                      cAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCaaa                                                                                                          <  1:285704/147‑1 (MQ=255)                                               aGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCg                                                                                                <  1:370498/148‑1 (MQ=255)                                                gcgcACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAg                                                                                              >  1:187547/1‑149 (MQ=255)                                                gcgcACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAg                                                                                              >  3:162897/1‑149 (MQ=255)                                                  gcacgcaGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCa                                                                                            <  6:262325/149‑1 (MQ=255)                                                              gACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCgg                                                                                  <  3:289311/147‑1 (MQ=255)                                                                  gTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCAcc                                                                            <  2:187547/149‑1 (MQ=255)                                                                      ccAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCctct                                                                        <  4:162897/149‑1 (MQ=255)                                                                          cGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCtctatc                                                                     >  7:272581/1‑148 (MQ=255)                                                                              cgcgcCTGTACCGTGGCCTGGTGGTGGGCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGCCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTg                                                                <  4:227502/149‑1 (MQ=255)                                                                               gcgcCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTgg                                                               >  3:245383/1‑149 (MQ=255)                                                                                      tACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCcgacg                                                         >  5:493/1‑148 (MQ=255)                                                                                        ccGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGCTCAAACAGATCAGCGAGCAGTTGGCGCGGGCCCCCCTCTATCTATTGGCCGACGAAt                                                      >  7:54981/1‑149 (MQ=255)                                                                                        ccGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCcgacga                                                        >  1:48164/1‑147 (MQ=255)                                                                                        ccGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCcgacga                                                        <  2:48164/147‑1 (MQ=255)                                                                                        ccGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAAt                                                      >  6:365393/1‑149 (MQ=255)                                                                                        ccGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAAt                                                      >  3:308376/1‑149 (MQ=255)                                                                                          gTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTg                                                    <  6:72548/149‑1 (MQ=255)                                                                                            ggCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCAcc                                                                            <  7:220709/123‑1 (MQ=255)                                                                                            ggCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCAcc                                                                            >  8:220709/1‑123 (MQ=255)                                                                                                       ggtCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCgg                                       <  6:33276/149‑1 (MQ=255)                                                                                                       gggcGAGAAGATTGGCCCGCATGCGGAGCAAGTGCTACTCAAGGTGGTCCAGGAAGACCTGATGCTGGTCGCGCAGATCAACCAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTTCGCTACCCgg                                       <  8:272581/146‑1 (MQ=255)                                                                                                        gtCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCgg                                       <  4:245383/148‑1 (MQ=255)                                                                                                           gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTg                                                 <  5:38794/135‑1 (MQ=255)                                                                                                           gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTg                                                 >  6:38794/1‑135 (MQ=255)                                                                                                           gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCggagct                                   >  7:288300/1‑145 (MQ=255)                                                                                                           gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCg                                        <  8:288300/144‑1 (MQ=255)                                                                                                            ataagaTTGGCCCGCATGCGGAGCAAGTGCTACCCAAGGTGGGCCAGGAAGACCTTATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGcc                                  <  7:235612/147‑1 (MQ=255)                                                                                                            agaagaTTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGcc                                  <  4:308376/149‑1 (MQ=255)                                                                                                             gaagaTTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGGCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCg                                 <  8:197065/149‑1 (MQ=255)                                                                                                                gaTTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgccccctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggcgttc                              <  6:192017‑M2/149‑114 (MQ=255)                                                                                                                   tGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggcgttcc                             <  6:158710‑M2/147‑115 (MQ=255)                                                                                                                     gCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcag                         >  1:207058/1‑149 (MQ=255)                                                                                                                     gCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcag                         <  7:222681/149‑1 (MQ=255)                                                                                                                      cccGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggcgttcccagat                        >  5:192017‑M2/1‑30 (MQ=255)                                                                                                                          cATGCGGCGCAAGTGCTACGCAAGGGGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATC‑AACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGt                   <  4:209400/149‑1 (MQ=255)                                                                                                                              cggcgCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTg                >  7:309992/1‑149 (MQ=255)                                                                                                                                  gcAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGca             >  1:314444/1‑148 (MQ=255)                                                                                                                                    aaGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGGGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcag                            <  4:346813/131‑1 (MQ=255)                                                                                                                                    aaGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGGGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcag                            >  3:346813/1‑131 (MQ=255)                                                                                                                                        gCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATc       >  5:256860/1‑148 (MQ=255)                                                                                                                                         cTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCa      <  5:365393/148‑1 (MQ=255)                                                                                                                                           aCGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAg    >  5:205470/1‑148 (MQ=255)                                                                                                                                            cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCTAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCa  <  6:493/149‑1 (MQ=255)                                                                                                                                            cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAg    >  4:164707/1‑147 (MQ=255)                                                                                                                                            cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCa  <  3:164707/149‑1 (MQ=255)                                                                                                                                            cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGGTGGCGCGGGCCACCCTCTATCTATTGGCCGAAGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGc   <  8:305654/148‑1 (MQ=255)                                                                                                                                             gCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTgg                                                               >  4:50113/1‑87 (MQ=255)                                                                                                                                                   |                                                                                                                                              GATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCA  >  NC_002947/1357023‑1357310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.