New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1572594	57 (0.960)	3 (0.050)	3/240	NT	5.7%	coding (716/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	= 1572655	45 (0.810)					coding (777/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase

TCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1572439‑1572594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcggtTTGCATCAGCAAGCTGATATCACGGCCGAACTTGCCCAGGCTGCCGGCAACCAGGCCCAATACCGAGGC  <  NC_002947/1572655‑1572587                                                                                                                                                                                                                                   TCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTG                                                                              >  7:74433/1‑149   TGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCC                                                                            >  4:103080/1‑149    GGTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCT                                                                           >  2:269648/1‑149     GTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCT                                                                           <  4:25220/148‑1     GTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCT                                                                           <  6:322713/148‑1        CTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGGTTGCCTCGG                                                                        >  7:10830/1‑148          GCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCT                                                                           >  3:66362/1‑143          GCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCT                                                                           <  4:66362/143‑1                                                       GGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGATCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGT                                                                       <  2:352955/102‑1                                                       GGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGT                                                                       >  1:352955/1‑102                                                                            GCTGGCCGAACAGCTGAAGCTGACCCTGGCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTTTGCATCAGCAAGCTGATATCACGGCCGAACTTGCCCAGGCTGCCGGCAACCAGGCCCAATACCGAGG   <  7:67347/149‑1                                                                                                                            CCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTTTGCATCAGCAAGCTGATATCACGGCCGAACTTGCCCAGGCTGCCGGCAACCAGGCCCAATACCGAGGC  >  5:281550/1‑102                                                                                                                            CCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTTTGCATCAGCAAGCTGATATCACGGCCGAACTTGCCCAGGCTGCCGGCAACCAGGCCCAATACCGAGGC  <  6:281550/102‑1                                                                                                                                                                                                                                   TCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGCCTGGCGGCGCTGGGCAGCAAGGCGATGCCGGTGGCCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1572439‑1572594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcggtTTGCATCAGCAAGCTGATATCACGGCCGAACTTGCCCAGGCTGCCGGCAACCAGGCCCAATACCGAGGC  <  NC_002947/1572655‑1572587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.