New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1572594	57 (0.960)	3 (0.050)	3/240	NT	5.7%	coding (716/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	= 1572655	45 (0.810)					coding (777/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase

CCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAG  >  NC_002947/1572507‑1572800                                                                                                                                                     |                                                                                                                                                   ccGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCaa                                                                                                                                                    <  6:384018/149‑1 (MQ=255)            gCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGCCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCggg                                                                                                                                         <  1:269648/149‑1 (MQ=255)             ccGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCgggg                                                                                                                                        <  3:170762/149‑1 (MQ=255)             ccGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATCGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCgggg                                                                                                                                        <  2:130201/149‑1 (MQ=255)              cGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCgggg                                                                                                                                        >  2:203886/1‑148 (MQ=255)                  cAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGgt                                                                                                                                   <  3:193287/149‑1 (MQ=255)                    gCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGgtgt                                                                                                                                 <  4:367025/149‑1 (MQ=255)                        aaGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGttt                                                                                                                               >  5:270615/1‑147 (MQ=255)                        aaGCTGACACTGCCCGAGCAGCCCTGGCACACCCAGCGCGAACGACTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCAGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACAGAGGCGGGGCAGGTGttt                                                                                                                               >  5:101051/1‑147 (MQ=255)                               cccTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAATCCGAGGCGGGGGAGGTGTTTGAGCCTTCt                                                                                                                      <  5:234556/149‑1 (MQ=255)                                ccTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGa                                                                                                                             >  1:372727/1‑141 (MQ=255)                                ccTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGa                                                                                                                             <  2:372727/141‑1 (MQ=255)                                ccTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTg                                                                                                                     >  5:115790/1‑149 (MQ=255)                                       gAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATCCAAACCGAGGCGGGGGAGGTGTTTGAGACTTCTGCGCCggg                                                                                                              >  6:97480/1‑149 (MQ=255)                                               cTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCggg                                                                                                                                         <  1:363378/114‑1 (MQ=255)                                               cTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCggg                                                                                                                                         >  2:363378/1‑114 (MQ=255)                                                  gCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGtt                                                                                                   >  3:258647/1‑149 (MQ=255)                                                  gCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGtt                                                                                                   <  7:209175/149‑1 (MQ=255)                                                    acacCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTAGCTGATGCAAACCGCGGCGGTGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttct                                                                                                 >  3:211227/1‑149 (MQ=255)                                                     cacCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttctt                                                                                                <  6:270615/149‑1 (MQ=255)                                                      acCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttct                                                                                                 >  8:290526/1‑147 (MQ=255)                                                      acCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttct                                                                                                 <  7:290526/147‑1 (MQ=255)                                                        ccAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGa                                                                                                                             <  3:271045/117‑1 (MQ=255)                                                        ccAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGa                                                                                                                             >  4:271045/1‑117 (MQ=255)                                                               gACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGc                                                                                      >  4:367222/1‑148 (MQ=255)                                                                       ggtggATGTTGCCTCGGTATTGGGCCTGGTGGCCGGCAGCCTGGTCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAgc                                                                             <  4:211227/149‑1 (MQ=255)                                                                        gtggAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAgcg                                                                            <  4:258647/149‑1 (MQ=255)                                                                              tttGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAAccc                                                                      >  3:133109/1‑149 (MQ=255)                                                                                 gCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAaccgaggcaaactccaccaggcggtcgcgctgg                                                                                                                   <  6:281550‑M2/102‑34 (MQ=255)                                                                                 gCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAaccgaggcaaactccaccaggcggtcgcgctgg                                                                                                                   >  5:281550‑M2/1‑69 (MQ=255)                                                                                  ccTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAaccgaggcaaactccaccaggcggtcgcgctgggtgtgccagggctgctcggccagggtcagcttcagctgttcggccagc                                                                   <  7:67347‑M2/149‑82 (MQ=255)                                                                                   cTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGCACCATGCCACACAAGCGCAACCCggtg                                                                  <  1:203886/149‑1 (MQ=255)                                                                                   cTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAACTTCGGCCGTGATATCACCTTGCTGATGCAAACCGAGGCGGGGGACGTGTGTGAGCCTTCTGCGCCGGGCAAGGGTGGATCTTCG‑ACCATGCCACACACGCGCACCCCggagg                                                                 >  4:63717/1‑149 (MQ=255)                                                                                    tCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCggtggg                                                                >  5:10575/1‑149 (MQ=255)                                                                                        tATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTgcc                                                            <  1:90979/149‑1 (MQ=255)                                                                                          ttGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGGTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTgccg                                                           <  6:115790/148‑1 (MQ=255)                                                                                                   gTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGATTTCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGAt                                                 >  2:284011/1‑149 (MQ=255)                                                                                                    ttGCCGGCAGCCTGGGCTAGTTCGTCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGTGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGGGCAACCCGGTGGGTGCCGCCGTGTTTAt                                                 <  6:101051/148‑1 (MQ=255)                                                                                                         ggCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCcacac                                                                                 >  5:261797/1‑111 (MQ=255)                                                                                                         ggCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCcacac                                                                                 <  6:261797/111‑1 (MQ=255)                                                                                                         ggCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCggt                                                                   >  5:168432/1‑125 (MQ=255)                                                                                                         ggCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCggt                                                                   <  6:168432/125‑1 (MQ=255)                                                                                                                      aGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTg                              >  5:57252/1‑149 (MQ=255)                                                                                                                            gCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGc                        >  5:383511/1‑149 (MQ=255)                                                                                                                             ccGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGcc                       >  4:278169/1‑149 (MQ=255)                                                                                                                                 gATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttcttc                                                                                               <  5:321701/74‑1 (MQ=255)                                                                                                                                 gATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGttcttc                                                                                               >  6:321701/1‑74 (MQ=255)                                                                                                                                     tCAGCTTGCTGATGGAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCg                           >  7:325503/1‑137 (MQ=255)                                                                                                                                     tCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCg                           <  8:325503/137‑1 (MQ=255)                                                                                                                                       aGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGAc             <  6:10575/149‑1 (MQ=255)                                                                                                                                        gCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACg            >  5:223439/1‑149 (MQ=255)                                                                                                                                             cTGATGCAAACCGAGGCGGGGGAGGTGGTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGt        <  5:97480/148‑1 (MQ=255)                                                                                                                                              tGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCctgctg                  >  1:40773/1‑137 (MQ=255)                                                                                                                                              tGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCctgctg                  <  2:40773/137‑1 (MQ=255)                                                                                                                                              tGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGCGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGCTGGGTGCCGCCGTGTTGATCGGTGCCGAGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTc      >  8:100254/1‑149 (MQ=255)                                                                                                                                                  gCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAg  >  6:340016/1‑149 (MQ=255)                                                                                                                                                   cAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAg  <  4:133109/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCGAAGCGCTGGCCGAACAGCTCAAGCTGACCCTGCCCGAGCAGCCCTGGCACACCCAGCGCGACCGCCTGGTGGAGTTTGCCTCGGTATTGGGCCTGGTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCG‑ACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAG  >  NC_002947/1572507‑1572800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.