| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1811415 = | 55 (0.930) | 3 (0.060) | 3/210 | NT | 8.0% | intergenic (+22/+106) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator |
| ? | NC_002947 | 1811495 = | 24 (0.500) | intergenic (+102/+26) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator | |||||
TACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1811585‑1811415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG > NC_002947/1811495‑1811642 TACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTG < 5:385323/149‑1TACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTG < 4:163120/149‑1 CGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTG > 1:232206/1‑147 CGGCTGGGGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGA < 6:78551/149‑1 ACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCC < 8:14126/148‑1 ACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG > 4:228995/1‑140 ACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 3:228995/140‑1 CCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG > 8:351471/1‑139 CCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 7:351471/139‑1 CTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAAACCGCACCTAAGACCGTCTGTGTCCAACCCCCGAATCAAAACATTGTAGGAGCGGGGTTAACCGCc > 6:246023/1‑148 TGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCAACGCCGGTCTGTGTCCCACCACCGATGCAATACATTGTAGGACCGGGTTTTCCCGCG > 3:21805/1‑148 ACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCC < 2:195767/135‑1 ACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCC > 1:195767/1‑135 CGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAG > 4:26503/1‑149 TAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCG < 4:65928/149‑1 GGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCC > 1:69046/1‑149 AGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCA < 1:137062/149‑1 GGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCC < 2:348553/46‑1 GGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCC > 1:348553/1‑46 GTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCG > 5:313965/1‑149 TTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGC > 8:278995/1‑149 ACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCAGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTTGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCG > 6:73681/1‑148 CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTAT > 3:100472/1‑149 GCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCC > 2:15916/1‑59 GCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCC < 1:15916/59‑1 AAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGACACGATACTCCGGCACCCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGC > 2:137997/1‑149 AAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGC > 2:137993/1‑149 AGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG < 7:278995/149‑1 TACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1811585‑1811415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG > NC_002947/1811495‑1811642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |