New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1811415 =	55 (0.930)	3 (0.060)	3/210	NT	8.0%	intergenic (+22/+106)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
	?	NC_002947	1811495 =	24 (0.500)					intergenic (+102/+26)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator

CGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG  >  NC_002947/1811348‑1811642                                                                                                                                                    |                                                                                                                                                    cGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAaga                                                                                                                                                    <  3:59910/149‑1 (MQ=255)    ctagctctAATGGTTGCGCCAGGGGTGGGGGGTTAAACGCTGAGCTTTCTCCTGGGCTGCCATTTTCGCGGGTAAACCCGCTCCTACAATGTATTGCATCGGTGGTTGGACACACACCGTCGTAGTAGCGGTTTTACCCGCGAAGAGGc                                                                                                                                                 <  8:69949/145‑1 (MQ=37)        ctcGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAg                                                                                                                                              >  3:285969/1‑148 (MQ=255)          cGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTAc                                                                                                                                           <  7:73655/149‑1 (MQ=255)           gAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTTCAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTAc                                                                                                                                           >  3:65928/1‑148 (MQ=255)              tGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACcagc                                                                                                                                       <  2:46161/149‑1 (MQ=255)                gTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGGGCCGAAAATGGATTGGATGGGTGGGTGGACCCAGACCGGGGTAGGAGCGGGGTTTCCCGCGAAGAGGGCCGTACcagccg                                                                                                                                     >  5:246023/1‑147 (MQ=255)                gTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACcagcag                                                                                                                                     <  1:125101/149‑1 (MQ=255)                    cgcCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGTTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGcaca                                                                                                                                 <  6:356774/149‑1 (MQ=255)                       cAGCGCTGGGCGGGTTAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATcc                                                                                                                              <  8:259580/149‑1 (MQ=255)                                    gTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAAc                                                                                                                 >  1:80388/1‑149 (MQ=255)                                       aaCGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGAt                                                                                                              <  2:80388/149‑1 (MQ=255)                                          gCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                                                                                                 >  8:76864/1‑111 (MQ=255)                                          gCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                                                                                                 <  7:76864/111‑1 (MQ=255)                                           cTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAATGATACTc                                                                                                          <  4:285969/149‑1 (MQ=255)                                              ccggTTCTCCTGGGGTGGCCTTAGCGCCGGAATCCCCGGTCATACATTGTATGGCAACGGCGGTTGGACACCTTCCGTCGTAGGAGCGGTTTTACGCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTcc                                                                                                         <  4:84944/144‑1 (MQ=255)                                                                  ttttCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGc                                                                                                                       <  8:281526/113‑1 (MQ=255)                                                                  ttttCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGc                                                                                                                       >  7:281526/1‑113 (MQ=255)                                                                      gGCGGTTAACCCCGCTCCTACAATGTTTTGATTCGGGGGTTGGACACAGACGGTCTTAGGTGCGGTTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAg                                                                               >  6:246023‑M1/2‑149 (MQ=255)                                                                      CGCGGGAAAACCCGGTCCTACAATGTATTGCATCGGTGGTGGGACACAGACCGGCGTTGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCa                                                                                >  3:21805‑M1/1‑148 (MQ=255)                                                                         GGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGt                                                                             <  8:14126‑M1/148‑1 (MQ=255)                                                                               acccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCcctcc                                                                                    >  1:195767‑M2/70‑135 (MQ=255)                                                                               acccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCcctcc                                                                                    <  2:195767‑M2/66‑1 (MQ=255)                                                                                 CCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAgg                                                                              >  8:351471‑M1/1‑139 (MQ=255)                                                                                 CCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAgg                                                                              <  7:351471‑M1/139‑1 (MQ=255)                                                                                 CCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGt                                                                             >  4:228995‑M1/1‑140 (MQ=255)                                                                                 CCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGt                                                                             <  3:228995‑M1/140‑1 (MQ=255)                                                                                  cgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAg                                                                   >  4:26503‑M2/67‑149 (MQ=255)                                                                                     TCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCCCCAgccg                                                                <  6:78551‑M1/149‑1 (MQ=255)                                                                                          CAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGccgccg                                                             >  1:232206‑M1/1‑147 (MQ=255)                                                                                          CAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTa                                                           <  4:163120‑M1/149‑1 (MQ=255)                                                                                          CAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTa                                                           <  5:385323‑M1/149‑1 (MQ=255)                                                                                                aTTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCg                                                     >  5:157474/1‑149 (MQ=255)                                                                                                      tCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACa                                               <  7:14126/149‑1 (MQ=255)                                                                                                                   acaGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAgg                                                                              <  4:309175/105‑1 (MQ=255)                                                                                                                   acaGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAgg                                                                              >  3:309175/1‑105 (MQ=255)                                                                                                                   acaGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTctgctg                                  >  3:97162/1‑149 (MQ=255)                                                                                                                   acaGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTctgc                                    <  4:289934/147‑1 (MQ=255)                                                                                                                   acaGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTctgc                                    >  3:289934/1‑147 (MQ=255)                                                                                                                     aGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATccacca                                                                    <  7:83913/113‑1 (MQ=255)                                                                                                                     aGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATccacca                                                                    >  8:83913/1‑113 (MQ=255)                                                                                                                     aGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCg                                >  1:337408/1‑149 (MQ=255)                                                                                                                         cgtcgtAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATa                            >  2:137062/1‑149 (MQ=255)                                                                                                                           tcgtAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATa                            >  8:230572/1‑147 (MQ=255)                                                                                                                              taggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAgcg                       <  4:65928‑M2/127‑1 (MQ=255)                                                                                                                                ggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGcc                     >  1:69046‑M2/21‑149 (MQ=255)                                                                                                                                  agcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCa                   <  1:137062‑M2/131‑1 (MQ=255)                                                                                                                                      ggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGcc                                                                                                                      >  1:348553‑M2/15‑46 (MQ=255)                                                                                                                                      ggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGcc                                                                                                                      <  2:348553‑M2/32‑1 (MQ=255)                                                                                                                                       gtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccg              >  5:313965‑M2/14‑149 (MQ=255)                                                                                                                                        tttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgc             >  8:278995‑M2/13‑149 (MQ=255)                                                                                                                                           acccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCAGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTTGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgccg           >  6:73681‑M2/10‑148 (MQ=255)                                                                                                                                             ccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTAt        >  3:100472‑M2/8‑149 (MQ=255)                                                                                                                                               gcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAAcccc                                                                                                >  2:15916‑M2/6‑59 (MQ=255)                                                                                                                                               gcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAAcccc                                                                                                <  1:15916‑M2/54‑1 (MQ=255)                                                                                                                                                  aaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGACACGATACTCCGGCACCCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggc   >  2:137997‑M2/3‑149 (MQ=255)                                                                                                                                                  aaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggc   >  2:137993‑M2/3‑149 (MQ=255)                                                                                                                                                   aGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg  <  7:278995‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG  >  NC_002947/1811348‑1811642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.