| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1889997 | 46 (0.780) | 4 (0.070) | 4/240 | NT | 8.8% | coding (276/3480 nt) | PP_1695 | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1890029 | 40 (0.720) | coding (244/3480 nt) | PP_1695 | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator | |||||
ACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1889845‑1889997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgatcTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAGAACATCACCTCGATCGCCGACTTCATTGCCGCGCGCTACGGCAAGTCGCAGACCCTGGCAGTGGTGGTGGCACTGATCTGCCTGGTCGGTGTGCTGCCG < NC_002947/1890029‑1889883 ACGCCCAGTACGATGCCCTTGAGCTGCACGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGGGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGC < 7:278394/148‑1 GCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGA > 4:10557/1‑149 CCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCTTCGCCCCTTGG > 3:144723/1‑149 CCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCA < 4:144723/149‑1 CACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAG < 3:53602/127‑1 CACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAG > 4:53602/1‑127 ATCTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAGAACATCACCTCGATCGCCGACTTCATTGCCGCGCGCTACGGCAAGTCGCAGACCCTGGCAGTGGTGGTGGCACTGATCTGCCTGGTCGGTGTGCTGCC > 2:241562/1‑149 CTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAGAACATCACCTCGATCGCCGACTTCATTGCCGCGCGCTACGGCAAGTCGCAGACCCTGGCAGTGGTGGTGGCACTGATCTGCCTGGTCGGTGTGCTGCCG > 6:326149/1‑148 CTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAGAACATCACCTCGATCGCCGACTTCATTGCCGCGCGCTACGGCAAGTCGCAGACCCTGGCAGTGGTGGTGGCACTGATCTGCCTGGTCGGTGTGCTGCCG > 6:44470/1‑148 ACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1889845‑1889997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgatcTTCGCCCCTTGGGTGCTGCAGAAGATGGTGCTGATCAGCAAGCAGCAGAACATCACCTCGATCGCCGACTTCATTGCCGCGCGCTACGGCAAGTCGCAGACCCTGGCAGTGGTGGTGGCACTGATCTGCCTGGTCGGTGTGCTGCCG < NC_002947/1890029‑1889883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |