| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1889997 | 46 (0.780) | 4 (0.070) | 4/240 | NT | 8.8% | coding (276/3480 nt) | PP_1695 | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1890029 | 40 (0.720) | coding (244/3480 nt) | PP_1695 | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator | |||||
AGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGG > NC_002947/1889851‑1890144 | aGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAg > 4:41590/1‑149 (MQ=255) gTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGc < 6:99908/149‑1 (MQ=255) aTGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCAt > 7:240189/1‑149 (MQ=255) tGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCAtc < 6:26024/149‑1 (MQ=255) ccTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCttcgccccttgg > 3:144723‑M1/1‑137 (MQ=255) cTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCAtcttct > 2:71845/1‑149 (MQ=255) gAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTgc < 6:310917/148‑1 (MQ=255) gAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTg < 1:71845/147‑1 (MQ=255) tccTGCAACGCGATTTACGGCACCACAACGACCATGCACATCAGTTCCACCAACACTTCCATGGTTTTTGACTTGTCGTTTTGCGCGGTAATTAATTTGGCGTTCTTGGTGTTTTTTTGCTGCTTGCTGATCAGCACCATCTTCTgca < 7:56251/146‑1 (MQ=255) cTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTgcagca < 5:58083/149‑1 (MQ=255) cAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCAccc < 1:143725/149‑1 (MQ=255) cAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCAcc > 2:64678/1‑148 (MQ=255) aGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTTGGCAGCAccc > 1:320509/1‑147 (MQ=255) gATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAgggg < 3:10557/149‑1 (MQ=255) aTGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGc > 2:112466/1‑149 (MQ=255) cGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAg > 6:44470‑M2/1‑147 (MQ=255) cGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAg > 6:326149‑M2/1‑147 (MQ=255) ggCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgat > 2:241562‑M2/1‑146 (MQ=255) acacCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATcagcag < 1:112466/149‑1 (MQ=255) ccGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCttcgccccttgggtgctgcagaagatggtgctgatcagcaagca < 4:144723‑M1/149‑45 (MQ=255) cGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATcagcagcag > 7:14158/1‑148 (MQ=255) cAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCg < 6:195412/149‑1 (MQ=255) aGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCgg > 1:45496/1‑149 (MQ=255) ggCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCg < 7:222382/147‑1 (MQ=255) gCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGc > 7:25353/1‑149 (MQ=255) aGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCAcc > 3:17274/1‑96 (MQ=255) aGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCAcc < 4:17274/96‑1 (MQ=255) accaccacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATggg > 1:5586/1‑149 (MQ=255) accacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAg < 1:64678/149‑1 (MQ=255) cacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCttcgccccttgggtgctgcagaagatggtgctgatcagcaagcagcag < 3:53602‑M1/127‑49 (MQ=255) cacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCttcgccccttgggtgctgcagaagatggtgctgatcagcaagcagcag > 4:53602‑M1/1‑79 (MQ=255) ggTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCgaa < 3:41590/149‑1 (MQ=255) ggTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCa > 3:76182/1‑147 (MQ=255) gCCGTAGCGCGCGGCAATGCAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTcggcg < 1:152574/148‑1 (MQ=255) gCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTcggc < 8:25353/147‑1 (MQ=255) ccGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGTGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCggcggc < 2:320509/149‑1 (MQ=255) gTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCt > 4:187765/1‑149 (MQ=255) gcgcgGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGcc > 1:156659/1‑148 (MQ=255) ggCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAg > 3:124340/1‑114 (MQ=255) ggCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAg < 4:124340/114‑1 (MQ=255) cAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACcgcg > 7:180736/1‑149 (MQ=255) aaGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCgaa < 5:228025/149‑1 (MQ=255) cGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTc > 4:251055/1‑149 (MQ=255) aTCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCa < 4:76182/149‑1 (MQ=255) gTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGt < 2:156659/149‑1 (MQ=255) tGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTg < 2:5586/149‑1 (MQ=255) gATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCt > 3:159557/1‑104 (MQ=255) gATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCt < 4:159557/104‑1 (MQ=255) ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtg < 3:53602‑M2/127‑80 (MQ=255) ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtg > 4:53602‑M2/1‑48 (MQ=255) ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGCTCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTaca > 5:384706/1‑149 (MQ=255) tgctgcTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGa > 1:184442/1‑115 (MQ=255) tgctgcTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGa < 2:184442/115‑1 (MQ=255) ctgctTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACgg > 6:119946/1‑149 (MQ=255) tgcttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcgg < 4:144723‑M2/149‑106 (MQ=255) cttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGc > 6:296635/1‑147 (MQ=255) cttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGc > 4:22224/1‑147 (MQ=255) gctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGc < 8:14158/148‑1 (MQ=255) tGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGa > 2:169656/1‑148 (MQ=255) aTCttcgccccttgggtgctgcagaagatggtgctgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcggtgtgctgcc > 2:241562‑M1/1‑3 (MQ=255) cttcgccccttgggtgctgcagaagatggtgctgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcggtgtgctgccg > 6:44470‑M1/1‑1 (MQ=255) cttcgccccttgggtgctgcagaagatggtgctgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcggtgtgctgccg > 6:326149‑M1/1‑1 (MQ=255) | AGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGG > NC_002947/1889851‑1890144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |