New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1889997	46 (0.780)	4 (0.070)	4/240	NT	8.8%	coding (276/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 1890029	40 (0.720)					coding (244/3480 nt)	PP_1695	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator

CGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCACGCAGCTTTGGCGG  >  NC_002947/1889883‑1890173                                                                                                                                                   |                                                                                                                                                  cGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAg                                                                                                                                                  >  6:44470‑M2/1‑147 (MQ=255) cGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAg                                                                                                                                                  >  6:326149‑M2/1‑147 (MQ=255)  ggCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgat                                                                                                                                                >  2:241562‑M2/1‑146 (MQ=255)        acacCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATcagcag                                                                                                                                          <  1:112466/149‑1 (MQ=255)            cGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATcagcagcag                                                                                                                                       >  7:14158/1‑148 (MQ=255)                cAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCg                                                                                                                                  <  6:195412/149‑1 (MQ=255)                 aGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCgg                                                                                                                                 >  1:45496/1‑149 (MQ=255)                  ggCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCg                                                                                                                                  <  7:222382/147‑1 (MQ=255)                   gCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGc                                                                                                                               >  7:25353/1‑149 (MQ=255)                                accaccacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑ggg                                                                                                                 >  1:5586/1‑149 (MQ=255)                                   accacTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAg                                                                                                              <  1:64678/149‑1 (MQ=255)                                              ggTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCgaa                                                                                                   <  3:41590/149‑1 (MQ=255)                                              ggTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCa                                                                                                     >  3:76182/1‑147 (MQ=255)                                                          gCCGTAGCGCGCGGCAATGCAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTcggcg                                                                                        <  1:152574/148‑1 (MQ=255)                                                          gCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTcggc                                                                                         <  8:25353/147‑1 (MQ=255)                                                           ccGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGTGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCggcggc                                                                                      <  2:320509/149‑1 (MQ=255)                                                             gTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCt                                                                                    >  4:187765/1‑149 (MQ=255)                                                                  gcgcgGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGcc                                                                                >  1:156659/1‑148 (MQ=255)                                                                      ggCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAg                                                                                                              >  3:124340/1‑114 (MQ=255)                                                                      ggCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAg                                                                                                              <  4:124340/114‑1 (MQ=255)                                                                        cAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACcgcg                                                                         >  7:180736/1‑149 (MQ=255)                                                                             aaGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCgaa                                                                    <  5:228025/149‑1 (MQ=255)                                                                                    cGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTc                                                             >  4:251055/1‑149 (MQ=255)                                                                                      aTCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCa                                                           <  4:76182/149‑1 (MQ=255)                                                                                            gTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGt                                                     <  2:156659/149‑1 (MQ=255)                                                                                             tGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTg                                                    <  2:5586/149‑1 (MQ=255)                                                                                              gATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCt                                                                                                >  3:159557/1‑104 (MQ=255)                                                                                              gATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCt                                                                                                <  4:159557/104‑1 (MQ=255)                                                                                                    ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtg                                                                    <  3:53602‑M2/127‑80 (MQ=255)                                                                                                    ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtg                                                                    >  4:53602‑M2/1‑48 (MQ=255)                                                                                                    ctgctgCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGCTCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTaca                                             >  5:384706/1‑149 (MQ=255)                                                                                                     tgctgcTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGa                                                                              <  2:184442/115‑1 (MQ=255)                                                                                                     tgctgcTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGa                                                                              >  1:184442/1‑115 (MQ=255)                                                                                                       ctgctTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACgg                                          >  6:119946/1‑149 (MQ=255)                                                                                                        tgcttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcgg                                          <  4:144723‑M2/149‑106 (MQ=255)                                                                                                          cttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGc                                         >  4:22224/1‑147 (MQ=255)                                                                                                          cttgctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGc                                         >  6:296635/1‑147 (MQ=255)                                                                                                             gctGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGc                                     <  8:14158/148‑1 (MQ=255)                                                                                                               tGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGa                                   >  2:169656/1‑148 (MQ=255)                                                                                                                     gCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGaagaag                                                                >  1:157450/1‑113 (MQ=255)                                                                                                                     gCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGaagaag                                                                <  2:157450/113‑1 (MQ=255)                                                                                                                           tcttctGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAg                                      >  1:316731/1‑133 (MQ=255)                                                                                                                           tcttctGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAg                                      <  2:316731/133‑1 (MQ=255)                                                                                                                               ctGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAg                   <  1:169656/148‑1 (MQ=255)                                                                                                                                  cagcaCCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCa                >  1:284853/1‑149 (MQ=255)                                                                                                                                  cagcaCCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGc                 <  3:187765/147‑1 (MQ=255)                                                                                                                                        ccAAGGGGCGAAgatcagcaagcagcagaacatcacctcgatcgccgacttcattgccgcgcgctacggcaagtcgcagaccctggcagtggtggtggcactgatctgcctggtcggtgtgctgccgtacatcgccttgcagctcaagg          >  3:144723‑M2/1‑12 (MQ=255)                                                                                                                                        ccAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCACGCAGCt         >  1:321550/1‑149 (MQ=255)                                                                                                                                            ggggCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCACGCAGCTTTgg     <  3:251055/149‑1 (MQ=255)                                                                                                                                               gCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCACGCAGCTTTggcgg  <  2:45496/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGAT‑GGGCAGGAACGCCCAAAGCTGTTCGGCGGCCTGGCCGACCGCGCCGAAGAAGGTCCAGCTGGTGCAGTACACGGCCAGCGACAGGCTGTACACCCAGGCACGCAGCTTTGGCGG  >  NC_002947/1889883‑1890173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.