| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1904921 = | 40 (0.680) | 4 (0.070) | 4/242 | NT | 10.8% | coding (1176/2553 nt) | nirB | nitrite reductase large subunit |
| ? | NC_002947 | 1905001 = | 28 (0.500) | coding (1256/2553 nt) | nirB | nitrite reductase large subunit | |||||
GATCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1905074‑1904921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcgCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGC > NC_002947/1905001‑1905148 GATCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCT > 1:85779/1‑149GATCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCT > 2:362846/1‑149GATCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCT > 4:339845/1‑149 TCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGG < 2:260657/149‑1 TCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGG < 6:71641/149‑1 ACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGG > 7:266696/1‑138 ACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGG < 8:266696/138‑1 GCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCC > 8:5765/1‑149 CGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCGTCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCG > 3:227891/1‑149 CACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCGTCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCT < 4:227891/149‑1 GCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGA < 7:5765/149‑1 GGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCG < 6:185225/148‑1 GCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGC > 1:176611/1‑149 GATCGCGGCGCACACCGCCCCCTTGCTGACGTTGTGGCAGGAGCAGATGGTCGCGCTGTCGGGCAGCGCATCGGCGCCCAGGGCCGGCGCACCACCGCCTTGCGGCAAGATCAGCGCTGCCGGGTCGGCCGGCAGGGCGATGCCGTTCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1905074‑1904921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcgCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGC > NC_002947/1905001‑1905148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |