New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1904921 =	40 (0.680)	4 (0.070)	4/242	NT	10.8%	coding (1176/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	1905001 =	28 (0.500)					coding (1256/2553 nt)	nirB	nitrite reductase large subunit

AGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGCC  >  NC_002947/1904853‑1905149                                                                                                                                                     |                                                                                                                                                     ggcgcacaccgcccccttgctgacgttgtggcaggagcagatggtcgcgctgtcgggcagcgcatcggCGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGgcgc                                                                                                                                                      >  8:5765‑M1/69‑149 (MQ=255)     gCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGAt                                                                                                                                                  <  5:41492/149‑1 (MQ=255)     gCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGAt                                                                                                                                                  <  3:263748/149‑1 (MQ=255)       aaGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATgc                                                                                                                                                <  5:28298/149‑1 (MQ=255)                 tCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGa                                                                                                                                       >  5:81765/1‑148 (MQ=255)                        ggTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGa                                                                                                                               >  5:185225/1‑149 (MQ=255)                                    cGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCt                                                                                                                   >  3:339845/1‑149 (MQ=255)                                        aacaGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCca                                                                                                               >  2:85779/1‑149 (MQ=255)                                           aGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACaa                                                                                                            >  4:20196/1‑149 (MQ=255)                                               aTTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGt                                                                                                         >  7:118293/1‑148 (MQ=255)                                                ttACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCa                                                                                                       <  4:137372/149‑1 (MQ=255)                                                        cccTGTTGCAGTACGCCCAGAACGGCATCGGCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAcggg                                                                                               >  1:34959/1‑149 (MQ=255)                                                        cccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAgggg                                                                                               <  2:185036/149‑1 (MQ=255)                                                         ccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAggggg                                                                                              >  8:16468/1‑149 (MQ=255)                                                         ccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAggggg                                                                                              >  2:37540/1‑149 (MQ=255)                                                                   tACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAgcgc                                                                                                                                 >  1:32702/1‑104 (MQ=255)                                                                   tACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAgcgc                                                                                                                                 <  2:32702/104‑1 (MQ=255)                                                                    gcgcccagggccggcgcaccaccgccttgcggcaagatcagcgctgccgggtcggccggcagggcgatgccgttctgggcgCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGcgcc                                                                                   >  8:5765‑M2/82‑149 (MQ=255)                                                                     cgcccagggccggcgcaccaccgccttgcggcaagatcagcgctgccgggtcggccggcagggcgatgccgttctgggcgCCGATGCGCTGCCCGACAGCGCGACCGTCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGcgccg                                                                                  >  3:227891‑M2/81‑149 (MQ=255)                                                                        CCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGgt                                                                                          >  7:266696‑M1/1‑138 (MQ=255)                                                                        CCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGgt                                                                                          <  8:266696‑M1/138‑1 (MQ=255)                                                                        CCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGa                                                                               <  2:260657‑M1/149‑1 (MQ=255)                                                                        CCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGa                                                                               <  6:71641‑M1/149‑1 (MQ=255)                                                                          AGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATc                                                                             >  2:362846‑M1/1‑149 (MQ=255)                                                                          AGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATc                                                                             >  4:339845‑M1/1‑149 (MQ=255)                                                                          AGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATc                                                                             >  1:85779‑M1/1‑149 (MQ=255)                                                                              cGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGa                                                                           >  6:334485/1‑147 (MQ=255)                                                                                    caccaccgccttgcggcaagatcagcgctgccgggtcggccggcagggcgatgccgttctgggcgCCGATGCGCTGCCCGACAGCGCGACCGTCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCt                                                                   <  4:227891‑M2/84‑1 (MQ=255)                                                                                        cTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAg                                                               >  6:243193/1‑149 (MQ=255)                                                                                           gccttgcggcaagatcagcgctgccgggtcggccggcagggcgatgccgttctgggcgCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGa                                                            <  7:5765‑M2/91‑1 (MQ=255)                                                                                           ccggccgACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCg                                                             <  3:20196/148‑1 (MQ=255)                                                                                                cgACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCg                                                       <  5:243193/149‑1 (MQ=255)                                                                                                    ccGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGc                                                   <  5:71641/149‑1 (MQ=255)                                                                                                      gccAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCgg                                                 <  5:334485/147‑1 (MQ=255)                                                                                                           cgcTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAg                                            >  5:366151/1‑149 (MQ=255)                                                                                                             cTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAggg                                          <  2:34959/149‑1 (MQ=255)                                                                                                                            ggCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCcgc                           <  8:118293/149‑1 (MQ=255)                                                                                                                            ggCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCcgc                           >  4:216476/1‑149 (MQ=255)                                                                                                                             gCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCcgcg                          >  7:13476/1‑149 (MQ=255)                                                                                                                                   gtgCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCt                                                                   >  7:64706/1‑102 (MQ=255)                                                                                                                                   gtgCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCt                                                                   <  8:64706/102‑1 (MQ=255)                                                                                                                                        ccGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCgg               >  6:160712/1‑149 (MQ=255)                                                                                                                                          ggCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCggtg             <  6:120019/149‑1 (MQ=255)                                                                                                                                             ccTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGtt          <  6:81765/149‑1 (MQ=255)                                                                                                                                                 ggcgCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTgcg       <  6:185225‑M2/144‑1 (MQ=255)                                                                                                                                                    gCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGc   >  1:176611‑M2/2‑149 (MQ=255)                                                                                                                                                     ccGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGcc  <  6:366151/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGGCGGTGTGCGCCGCGATCGACAGCGGCTGCAGCGACCTCGCTGCGGTCAAGGGCTGCACCAAGGCCGCGACCGGCTGCGGTGGTTGCGCGGCC  >  NC_002947/1904853‑1905149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.