New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1904921 =	40 (0.680)	4 (0.070)	4/242	NT	10.8%	coding (1176/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	1905001 =	28 (0.500)					coding (1256/2553 nt)	nirB	nitrite reductase large subunit

ACGGTGCCACGCCGGGCGCGCGCAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGG  >  NC_002947/1904773‑1905057                                                                                                                                                     |                                                                                                                                         gccgcgcaaccaccgcagccggtcgcggccttggtgcagcccttgaccgcagcgaggtcgctgcagccgctgtcgatcgcggcgcacaccgcccccttgctgacgttgtggcaggagcagatggtcgcgctgtcgggcagcgcatcggc                                                                                                                                          >  1:176611‑M1/149‑149 (MQ=255)    gTGCCACGCCGGGCGCGCGCAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGcc                                                                                                                                       >  6:41492/1‑149 (MQ=255)     cgcaaccaccgcagccggtcgcggccttggtgcagcccttgaccgcagcgaggtcgctgcagccgctgtcgatcgcggcgcacaccgcccccttgctgacgttgtggcaggagcagatggtcgcgctgtcgggcagcgcatcggCGcc                                                                                                                                       <  6:185225‑M1/4‑1 (MQ=255)          cGCCGGGCGCGCGCAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAAc                                                                                                                                 >  6:337056/1‑149 (MQ=255)                gcgcgcgcAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATc                                                                                                                           >  8:39859/1‑149 (MQ=255)                  gcgcgcAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGc                                                                                                                         <  5:227522/149‑1 (MQ=255)                   cgcgcAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGcc                                                                                                                        <  1:252979/149‑1 (MQ=255)                                cTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCa                                                                                                                             >  1:190612/1‑131 (MQ=255)                                cTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCa                                                                                                                             <  2:190612/131‑1 (MQ=255)                                cTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGAcc                                                                                                           >  6:28298/1‑149 (MQ=255)                                     tCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCa                                                                                                      <  3:138287/149‑1 (MQ=255)                                         tGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAgcgc                                                                                                  <  7:175710/149‑1 (MQ=255)                                           aaGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTgccggc                                                                                                                >  6:213313/1‑133 (MQ=255)                                           aaGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTgccggc                                                                                                                <  5:213313/133‑1 (MQ=255)                                           aaGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCt                                                                                                 <  5:337056/148‑1 (MQ=255)                                             gCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCTCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTgc                                                                                                                    <  7:262059/127‑1 (MQ=255)                                             gCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCACGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTgc                                                                                                                    >  8:262059/1‑127 (MQ=255)                                               cAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCt                                                                                            >  2:262683/1‑149 (MQ=255)                                                aaCAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCtt                                                                                           <  7:167527/149‑1 (MQ=255)                                                aaCAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCtt                                                                                           >  4:263748/1‑149 (MQ=255)                                                      gcTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGc                                                                                      >  7:209142/1‑148 (MQ=255)                                                        ttACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAg                                                                                   >  1:185036/1‑149 (MQ=255)                                                          tcgctgcagccgctgtcgatcgcggcgcacaccgcccccttgctgacgttgtggcaggagcagatggtcgcgctgtcgggcagcgcatcggCGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGc                                                                                 <  7:5765‑M1/58‑1 (MQ=255)                                                                gTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCggtggt                                                                           <  8:209142/149‑1 (MQ=255)                                                                 agccgctgtcgatcgcggcgcacaccgcccccttgctgacgttgtggcaggagcagacggtcgcgctgtcgggcagcgcatcggCGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGgtggtg                                                                          <  4:227891‑M1/65‑1 (MQ=255)                                                                      tggtggATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCg                                                                     >  8:191451/1‑149 (MQ=255)                                                                       ggtggATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCgg                                                                    >  1:362846/1‑149 (MQ=255)                                                                           gATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGTCCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCt                                                                <  1:77485/149‑1 (MQ=255)                                                                           gATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCt                                                                <  5:164467/149‑1 (MQ=255)                                                                                cggcgcacaccgcccccttgctgacgttgtggcaggagcagacggtcgcgctgtcgggcagcgcatcggCGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGgcg                                                           >  3:227891‑M1/70‑149 (MQ=255)                                                                                 ggcgcacaccgcccccttgctgacgttgtggcaggagcagatggtcgcgctgtcgggcagcgcatcggCGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGgcgc                                                          >  8:5765‑M1/69‑149 (MQ=255)                                                                                     gCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGAt                                                      <  5:41492/149‑1 (MQ=255)                                                                                     gCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGAt                                                      <  3:263748/149‑1 (MQ=255)                                                                                       aaGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATgc                                                    <  5:28298/149‑1 (MQ=255)                                                                                                 tCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGa                                           >  5:81765/1‑148 (MQ=255)                                                                                                        ggTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGa                                   >  5:185225/1‑149 (MQ=255)                                                                                                                    cGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCt                       >  3:339845/1‑149 (MQ=255)                                                                                                                        aacaGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCca                   >  2:85779/1‑149 (MQ=255)                                                                                                                           aGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACaa                >  4:20196/1‑149 (MQ=255)                                                                                                                               aTTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGt             >  7:118293/1‑148 (MQ=255)                                                                                                                                ttACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAg                                                                                                     >  2:113256/1‑59 (MQ=255)                                                                                                                                ttACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCa           <  4:137372/149‑1 (MQ=255)                                                                                                                                    gACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTgg                                                              >  8:340576/1‑94 (MQ=255)                                                                                                                                        cccTGTTGCAGTACGCCCAGAACGGCATCGGCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAcggg   >  1:34959/1‑149 (MQ=255)                                                                                                                                        cccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAgggg   <  2:185036/149‑1 (MQ=255)                                                                                                                                         ccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAggggg  >  2:37540/1‑149 (MQ=255)                                                                                                                                         ccTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAggggg  >  8:16468/1‑149 (MQ=255)                                                                                                                                                   tACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAgcgc                                     <  2:32702/104‑1 (MQ=255)                                                                                                                                                   tACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAgcgc                                     >  1:32702/1‑104 (MQ=255)                                                                                                                                                     |                                                                                                                                         ACGGTGCCACGCCGGGCGCGCGCAGCTATCGCTTCATCGATGAAGCCAACAGCGCTTACCGCCGTTTGGTGGTGGATGCCAGCGGCAAGCACGTGCTCGGCGCGGTGCTGGTCGGCGACAACAGCTATTACGACACCCTGTTGCAGTACGCCCAGAACGGCATCGCCCTGCCGGCCGACCCGGCAGCGCTGATCTTGCCGCAAGGCGGTGGTGCGCCGGCCCTGGGCGCCGATGCGCTGCCCGACAGCGCGACCATCTGCTCCTGCCACAACGTCAGCAAGGGGG  >  NC_002947/1904773‑1905057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.