New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 205059519 (0.320)3 (0.070) 3/182 NT 14.1% intergenic (‑88/+87) PP_1824/PP_1825 Smr domain‑containing protein/hypothetical protein
?NC_002947 = 2050631 23 (0.550)intergenic (‑124/+51) PP_1824/PP_1825 Smr domain‑containing protein/hypothetical protein

GGTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050411‑2050595
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCC  <  NC_002947/2050631‑2050486
                                                                                                                                                                                                                                                                                                                                           
GGTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGC                                                                                                                                                                                        >  5:291683/1‑149
    GGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGT                                                                                                                                                                                    >  8:349691/1‑149
      CCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGC                                                                                                                                                                                  >  3:18790/1‑149
           GGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGC                                                                                                                                                                              <  1:228649/148‑1
            GCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCT                                                                                                                                                                            >  6:103193/1‑149
              TTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCT                                                                                                                                                                          >  6:250308/1‑149
                GCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCAAGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGGAGGCGGTGCGGGCCGCTTC                                                                                                                                                                        >  4:305248/1‑149
                   GACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCG                                                                                                                                                                     >  3:17279/1‑149
                      TTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGT                                                                                                                                                                  >  7:183843/1‑149
                                  GTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCT                                                                                                                                                      <  7:349691/149‑1
                                  GTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCC                                                                                                                                                       >  7:42148/1‑148
                                                             TTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTC                                                                                                                                                        >  8:142712/1‑120
                                                             TTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTC                                                                                                                                                        <  7:142712/120‑1
                                                                          AGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGAAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGG                                                                                                                                                                                >  4:239537/1‑83
                                                                             GAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGG                                                                                                           <  8:42148/149‑1
                                                                                                    GCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                            <  7:21606/125‑1
                                                                                                    GCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                            >  8:21606/1‑125
                                                                                                                                                                  TTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCCCGAAGAGGCCCGCACAGGCTGCACAACGCCCCACAGTCGCGTAAACTAACCCGCCTACGTGGAGGCATCAT                      >  4:120396/1‑149
                                                                                                                                                                  TTCGCGGGGGAACCGGCTCCTACCCGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTCGCTCCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATC                        <  5:389621/147‑1
                                                                                                                                                                     GCGGGTCAACCCGCTCCAACAGCCCCCCCGCCGGCTTCGGGCTCTGTCACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGC                    <  2:285392/148‑1
                                                                                                                                                                             ACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGAC            >  5:142807/1‑148
                                                                                                                                                                             ACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCG                                        <  3:254362/120‑1
                                                                                                                                                                              CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGA          >  5:103193/1‑149
                                                                                                                                                                               CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGA             <  6:121601/145‑1
                                                                                                                                                                               CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGA             >  5:121601/1‑145
                                                                                                                                                                                 GCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTCCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCAGCTTGCAAGACGACGATTT       >  3:305248/1‑149
                                                                                                                                                                                    CCTCCAGGCACCCCGCCGGCTTCGGGCGCTGTCACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTC    <  8:213413/149‑1
                                                                                                                                                                                      TACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCC  >  5:250308/1‑149
                                                                                                                                                                                                                                                                                                                                           
GGTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050411‑2050595
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCC  <  NC_002947/2050631‑2050486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.