| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2380251 = | 52 (0.880) | 4 (0.070) | 4/240 | NT | 7.9% | intergenic (+26/‑86) | PP_2088/oprF | RNA polymerase sigma factor SigX/porin F |
| ? | NC_002947 | 2380275 = | 44 (0.790) | intergenic (+50/‑62) | PP_2088/oprF | RNA polymerase sigma factor SigX/porin F | |||||
GCCAATCGAAGTGGCGGCTACAAGCGAACCAATGGCCAAGCCCAAGGTGTTTTTCAGTTTCATCCGTTAAATCCCCATCTGGTGATAGTTAAGCAGTCCCACCACAAACAAGAGGGACAACTCGACGGCGAGTCTAGCAGAACTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2380399‑2380251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcgccgTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACGGATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCGCTTGTAGCCGCCACTTCGATTGGCGCTATGGCACAAGGTCAAGGCGC > NC_002947/2380275‑2380422 GCCAATCGAAGTGGCGGCTACAAGCGAACCAATGGCCAAGCCCAAGGTGTTTTTCAGTTTCATCCGTTAAATCCCCATCTGGTGATAGTTAAGCAGTCCCACCACAAACAAGAGGGACAACTCGACGGCGAGTCTAGCAGAACTCGCCG > 5:2348/1‑149GCCAATAGAATTGGTGTCTACAATCTAACCAATTGCCAAGCCCAATGTGTTTTTCAGTTTCATCCGTTAAATCCCCATCTGGTGATAGTTAAGCAGTCCCACCACAAACAAGAGGGACAACTCGACGGCGAGTCTAGCAGAACTCGCCG < 7:157921/149‑1 CCAATGGCCAAGCCCAAGGTGTTTTTCAGTTTCATCCGTTAAATCCCCATCTGGTGATAGTTAAGCAGTCCCACCACAAACAAGAGGGACAACTCGACGGCGAGTTCTGCTAGACTCGCCGTCGAGTTGTCCCTCTTGTTTGTGGTGGG < 2:95195/149‑1 AACTCGACGGCGAGTCTAGCAGAACTCGCCGTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACGGATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCGCTTGTAGCCGCCACTTC < 1:95195/149‑1 GACGGCGAGTCTAGCAGAACTCGCCGTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACG > 1:81217/1‑87 GACGGCGAGTCTAGCAGAACTCGCCGTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACG < 2:81217/87‑1 GTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACGGATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCGCTTGTAGCCGCCACTTCGATTGGCGCTATGGCACAAGGTCAAGGCGC < 2:12399/149‑1 GTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACGGATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCGCTTGTAGCCGCCACTTCGATTGGCGCTATGGCACAAGGTCAAGGCGC < 3:147711/149‑1 GCCAATCGAAGTGGCGGCTACAAGCGAACCAATGGCCAAGCCCAAGGTGTTTTTCAGTTTCATCCGTTAAATCCCCATCTGGTGATAGTTAAGCAGTCCCACCACAAACAAGAGGGACAACTCGACGGCGAGTCTAGCAGAACTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2380399‑2380251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcgccgTCGAGTTGTCCCTCTTGTTTGTGGTGGGACTGCTTAACTATCACCAGATGGGGATTTAACGGATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCGCTTGTAGCCGCCACTTCGATTGGCGCTATGGCACAAGGTCAAGGCGC > NC_002947/2380275‑2380422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |