New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2397411	51 (0.860)	3 (0.050)	3/242	NT	5.7%	coding (2246/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	= 2397434	51 (0.910)					coding (2223/3636 nt)	PP_2100	two‑component system sensor protein

AGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2397294‑2397411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcCGACCAGGGCCGGGTGGACCGCAGCGCGCTGGAACTGGCACACCATTCGGCCAAAGACCTGCTAGGCCTGATCGGTGACATTCTCGACATCGTGCGCATCGAGTCCGGGCACTTGTCCCTGGCCCCGGAGGTGGTCGACCTGGCGGC  <  NC_002947/2397434‑2397288                                                                                                                                                                                                                                                                           AGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCCGACCAGGGCCGGGTGGACCGCAGCGCGCTG                                                                                                                      <  3:303926/149‑1                                                         GAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCCGACCAGGGCCGGGTGGACCGCAGCGCGCTGGGAC                                                                                                                  >  1:278924/1‑97                                                         GAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCCGACCAGGGCCGGGTGGACCGCAGCGCGCTGGAAC                                                                                                                  <  2:278924/97‑1                                                                                                                     GCCGACCAGGGCCGGGTGGACCGCAGCGCGCTGGAACTGGCACACCATTCGGCCAAAGACCTGCTAGGCCTGATCGGTGACATTCTCGACATCGTGCGCATCGAGTCCGGGCACTTGTCCCTGGCCGCGGAGGTGGTCGACCTGGCGGC  >  2:301835/1‑149                                                                                                                                                                                                                                                                           AGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2397294‑2397411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcCGACCAGGGCCGGGTGGACCGCAGCGCGCTGGAACTGGCACACCATTCGGCCAAAGACCTGCTAGGCCTGATCGGTGACATTCTCGACATCGTGCGCATCGAGTCCGGGCACTTGTCCCTGGCCCCGGAGGTGGTCGACCTGGCGGC  <  NC_002947/2397434‑2397288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.