New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2397411	51 (0.860)	3 (0.050)	3/242	NT	5.7%	coding (2246/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	= 2397434	51 (0.910)					coding (2223/3636 nt)	PP_2100	two‑component system sensor protein

GCCGCCAGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGC  >  NC_002947/2397288‑2397582                                                                                                                                                   |                                                                                                                                                     gccgccAGGTCGACCACCTCCGCGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGgc                                                                                                                                                    >  2:301835‑M2/1‑147 (MQ=255)       aGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCtt                                                                                                                                              <  5:212300/149‑1 (MQ=255)            gACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCg                                                                                                                                         >  5:206010/1‑149 (MQ=255)              ccaccTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGc                                                                                                                                        >  2:269768/1‑148 (MQ=255)                 ccTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGt                                                                                                                                    >  8:347467/1‑149 (MQ=255)                 ccTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGt                                                                                                                                    >  2:156232/1‑149 (MQ=255)                          ccAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATg                                                                                                                           >  8:160858/1‑149 (MQ=255)                            aGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGcc                                                                                                                         >  8:195190/1‑149 (MQ=255)                             gggACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGcc                                                                                                                         >  6:55618/1‑148 (MQ=255)                                   aGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACg                                                                                                                  <  6:206010/149‑1 (MQ=255)                                        ccGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCAtt                                                                                                             >  3:65509/1‑149 (MQ=255)                                              tCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCgg                                                                                                       >  6:18743/1‑149 (MQ=255)                                                    cgcACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGc                                                                                                  <  1:175480/148‑1 (MQ=255)                                                      cACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGa                                                                                               >  6:125493/1‑149 (MQ=255)                                                          aTGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTc                                                                                           <  4:65509/149‑1 (MQ=255)                                                              cGAGAATGTCACCGATCAGGCCCAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTgg                                                                                       >  7:238893/1‑149 (MQ=255)                                                                agaATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATTGTGTGCCAGTTCCATCGCGCGGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGc                                                                                                                              <  7:188874/108‑1 (MQ=255)                                                                agaATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCt                                                                                     >  2:48207/1‑149 (MQ=255)                                                                  aaTGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGa                                                                                   >  1:177299/1‑149 (MQ=255)                                                                      tCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGt                                                                               >  5:370218/1‑149 (MQ=255)                                                                        aCCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGc                                                                                                                              >  1:1419/1‑100 (MQ=255)                                                                        aCCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGc                                                                                                                              <  2:1419/100‑1 (MQ=255)                                                                         ccGATCAGGCCTATCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTc                                                                              <  1:340739/147‑1 (MQ=255)                                                                         ccGATCAGGCCTAACAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTc                                                                              >  2:340739/1‑147 (MQ=255)                                                                             tCAGGCCTAGCAGGACTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCAGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAg                                                                         >  6:353382/1‑148 (MQ=255)                                                                               aGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGAt                                                                                  <  5:254353/137‑1 (MQ=255)                                                                               aGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGAt                                                                                  >  6:254353/1‑137 (MQ=255)                                                                                 gCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACg                                                                    >  5:293088/1‑149 (MQ=255)                                                                                 gCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACg                                                                    >  3:122853/1‑149 (MQ=255)                                                                                   cTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTg                                                                  <  6:370218/149‑1 (MQ=255)                                                                                      gCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGctc                                                               >  1:95637/1‑149 (MQ=255)                                                                                           tCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTg                                                                                        <  2:131206/119‑1 (MQ=255)                                                                                           tCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGgc                                                          <  5:353382/149‑1 (MQ=255)                                                                                           tCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGgc                                                          <  1:48207/149‑1 (MQ=255)                                                                                             tttGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGgcgc                                                        >  8:152345/1‑149 (MQ=255)                                                                                               tGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGgcgc                                                        <  5:55618/147‑1 (MQ=255)                                                                                                  ccGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTg                                                   <  7:160858/149‑1 (MQ=255)                                                                                                   cGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGACGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTgg                                                  >  4:288241/1‑149 (MQ=255)                                                                                                          tgtgCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCAtcgtc                                           <  7:152345/149‑1 (MQ=255)                                                                                                            tgCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCtt                                                             >  6:191995/1‑129 (MQ=255)                                                                                                            tgCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCAtcgtcg                                          <  7:195190/148‑1 (MQ=255)                                                                                                              ccAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGcc                                       >  7:357582/1‑149 (MQ=255)                                                                                                              ccAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGc                                        <  5:125493/148‑1 (MQ=255)                                                                                                                aGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTc                                                                                           >  8:134837/1‑95 (MQ=255)                                                                                                                aGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTc                                                                                           <  7:134837/95‑1 (MQ=255)                                                                                                                 gTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGgcgcgctggaactggcacaccattcggccaaagacctgctaggcctgatcggtgacattctc                                                                                        <  2:278924‑M2/97‑63 (MQ=255)                                                                                                                 gTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGACGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCctgc                                    <  3:288241/149‑1 (MQ=255)                                                                                                                 gTCCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGgcgcgctggaactggcacaccattcggccaaagacctgctaggcctgatcggtgacattctc                                                                                        >  1:278924‑M2/1‑35 (MQ=255)                                                                                                                     cAGCGCGCTGCGGTCCACCCGGCCCTGGTCGgcgcgctggaactggcacaccattcggccaaagacctgctaggcctgatcggtgacattctcgacatcgtgcgcatcgagtccgggcacttgtccctggccccggaggtggtcgacct                                <  3:303926‑M2/149‑119 (MQ=255)                                                                                                                      aGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCtt                               <  8:357582/149‑1 (MQ=255)                                                                                                                       gcgcgcTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTg                              <  8:238893/149‑1 (MQ=255)                                                                                                                        cgcgcTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTgg                             <  4:122853/149‑1 (MQ=255)                                                                                                                         gcgcTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGc                            <  6:293088/149‑1 (MQ=255)                                                                                                                                     aCCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCtt                                                             >  4:152843/1‑104 (MQ=255)                                                                                                                                     aCCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCtt                                                             <  3:152843/104‑1 (MQ=255)                                                                                                                                        cGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAg             <  2:95637/149‑1 (MQ=255)                                                                                                                                                   ggCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTCATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTggc  >  2:237912/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCCGCCAGGTCGACCACCTCCGGGGCCAGGGACAAGTGCCCGGACTCGATGCGCACGATGTCGAGAATGTCACCGATCAGGCCTAGCAGGTCTTTGGCCGAATGGTGTGCCAGTTCCAGCGCGCTGCGGTCCACCCGGCCCTGGTCGGCGCGCTTGACCGCCAGTTCCAGCATGCCGATCACGGCATTCATCGGGGTGCGGATTTCGTGGCTGATGGTCGCCAGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGC  >  NC_002947/2397288‑2397582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.