| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3100009 = | 44 (0.740) | 3 (0.050) | 3/242 | NT | 7.3% | coding (788/1470 nt) | PP_2709 | long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 3100076 = | 35 (0.630) | coding (855/1470 nt) | PP_2709 | long‑chain fatty acid‑‑CoA ligase | |||||
AGGGCGCACAGCCCCTGTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3100163‑3100009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT > NC_002947/3100076‑3100222 AGGGCGCACAGCCCCTGTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTG > 7:216944/1‑149 aacCGCACAGGGGCTGTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGG > 3:22134/4‑149 CCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGGTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTG > 3:5414/1‑149 TCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTG > 5:257118/1‑149 GCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTG < 6:257118/149‑1 GAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT < 4:255705/149‑1 GAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT > 7:316020/1‑149 AGGGCGCACAGCCCCTGTGCGGTTGAGCGCCACTACCGAGGCGCACTCGGACAAGCCGTAACCTTCGAACACCGGCAAACCGACTGCCTCGGCCCGCGCGAGCAGGCTTGGCGATACCCGAGCCCCGCCTACCGCCACCAAACGCAGTGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3100163‑3100009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT > NC_002947/3100076‑3100222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |