New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3100009 =	44 (0.740)	3 (0.050)	3/242	NT	7.3%	coding (788/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	3100076 =	35 (0.630)					coding (855/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase

CAGCAGCAGTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGT  >  NC_002947/3099861‑3100156                                                                                                                                                     |                                                                                                                                                    cagcagcagTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGt                                                                                                                                                     <  4:208041/149‑1 (MQ=255)  agcagcagTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGAGCGGGCTGATGCGGGTc                                                                                                                                                    >  5:97461/1‑149 (MQ=255)  acttcgccatcctcggcgatgcgcacctgcacatgcggcaatggcttgccgacgctcccagggcgcacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTc                                                                                                                                                    <  4:255705‑M1/2‑1 (MQ=255)  acttcgccatcctcggcgatgcgcacctgcacatgcggcaatggcttgccgacgctcccagggcgcacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTc                                                                                                                                                    >  7:316020‑M1/148‑149 (MQ=255)         ggtGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGGCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGcc                                                                                                                                                <  8:221082/144‑1 (MQ=255)         gTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGcc                                                                                                                                                >  7:221082/1‑146 (MQ=255)             gggATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGc                                                                                                                                          <  2:46447/148‑1 (MQ=255)                 tGGGAGGGTCATGCCTGGTCGATTTCAAGCTCCTGTTGGTCGCAATCGCCCTCAGTGGTGCTCAGAGACTGATCGTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGTGCGCTGGCTGATGCGGGTGGGCCCACTGCGTTtg                                                                                                                                     <  6:97461/149‑1 (MQ=255)                 tGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTtg                                                                                                                                     >  4:5696/1‑149 (MQ=255)                    gAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGt                                                                                                                                        >  5:385195/1‑143 (MQ=255)                    gAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGt                                                                                                                                        <  6:385195/143‑1 (MQ=255)                    gAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTtggtg                                                                                                                                  >  2:16721/1‑149 (MQ=255)                     aGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTtggtgg                                                                                                                                 <  1:210419/149‑1 (MQ=255)                         gCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCgg                                                                                                                              >  3:373550/1‑148 (MQ=255)                          cAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGGTGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCgg                                                                                                                              >  7:186103/1‑147 (MQ=255)                                     gATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCg                                                                                                                 >  3:70383/1‑149 (MQ=255)                                     gATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCg                                                                                                                 >  7:204179/1‑149 (MQ=255)                                     gATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCg                                                                                                                 <  4:70383/149‑1 (MQ=255)                                       tttCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCggg                                                                                                               <  8:204179/149‑1 (MQ=255)                                          cAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTAt                                                                                                            >  8:99719/1‑149 (MQ=255)                                           aaGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCgg                                                                                                                >  7:228626/1‑144 (MQ=255)                                           aaGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCgg                                                                                                                <  8:228626/144‑1 (MQ=255)                                                      gggCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGc                                                                                                >  5:290110/1‑149 (MQ=255)                                                            cagggcgcacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTcgcgc                                                                                          <  6:257118‑M1/60‑1 (MQ=255)                                                            aaTCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTGGGGTATCGCCAAGCCTgcgcgcgc                                                                                          >  6:264570/1‑149 (MQ=255)                                                            aaTCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTcgcgc                                                                                          >  2:212760/1‑149 (MQ=255)                                                                 cccTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGcc                                                                                     >  2:208661/1‑149 (MQ=255)                                                                  ccTCAGTGATGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCg                                                                                    >  8:254499/1‑149 (MQ=255)                                                                   cacagcccctgtgcggttgagcgccactaccgaggcgcactcggacaagccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGa                                                                                   >  5:257118‑M1/83‑149 (MQ=255)                                                                     cagcccctgtgcggttgagcgccactaccgaggcgcactcggacaacccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAgg                                                                                 >  3:5414‑M1/81‑149 (MQ=255)                                                                      aGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAg                                                                                  <  1:212760/147‑1 (MQ=255)                                                                      aGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTACTCGCGCGGGCCGAgg                                                                                 <  6:124417/148‑1 (MQ=255)                                                                          gtgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGGTGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGt                                                                             <  8:186103/148‑1 (MQ=255)                                                                             cTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGt                                                                         <  3:5696/149‑1 (MQ=255)                                                                                 gagCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGc                                                                     <  1:16721/149‑1 (MQ=255)                                                                                     cTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgt                                                                 >  5:355862/1‑149 (MQ=255)                                                                                       gATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgtgt                                                               >  5:335358/1‑149 (MQ=255)                                                                                        aTCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgtgt                                                               <  4:373550/148‑1 (MQ=255)                                                                                                gCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGt                                                       >  8:281140/1‑148 (MQ=255)                                                                                                  cGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTAc                                                    >  7:1053/1‑149 (MQ=255)                                                                                                                gggTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTg                                      >  8:64618/1‑149 (MQ=255)                                                                                                                      gTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTc                                <  5:366919/149‑1 (MQ=255)                                                                                                                         aCAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCgg                              <  8:1053/148‑1 (MQ=255)                                                                                                                             cGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                         <  7:64618/149‑1 (MQ=255)                                                                                                                                    gcgcGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                  <  7:68893/117‑1 (MQ=255)                                                                                                                                    gcgcGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                  >  8:68893/1‑117 (MQ=255)                                                                                                                                      gcgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCgg                                                                                        >  7:300851/1‑77 (MQ=255)                                                                                                                                      gcgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCgg                                                                                        <  8:300851/77‑1 (MQ=255)                                                                                                                                       cgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAAcc               <  6:355862/149‑1 (MQ=255)                                                                                                                                          gCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGca            <  7:99719/149‑1 (MQ=255)                                                                                                                                          gCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGca            >  4:22134/1‑149 (MQ=255)                                                                                                                                                  gggTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCt    <  1:208661/149‑1 (MQ=255)                                                                                                                                                    gTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgt  >  8:216944/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAGCAGCAGTTGGGGATGGGAGGGGCAAGCCAGGTCGATTTCAAGCGCCTGTTGGGCGCAATCGCCCTCAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGT  >  NC_002947/3099861‑3100156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.