New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3100009 =	44 (0.740)	3 (0.050)	3/242	NT	7.3%	coding (788/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	3100076 =	35 (0.630)					coding (855/1470 nt)	PP_2709	long‑chain fatty acid‑‑CoA ligase

CAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT  >  NC_002947/3099929‑3100222                                                                                                                                                    |                                                                                                                                                   cagcccctgtgcggttgagcgccactaccgaggcgcactcggacaacccgtaaccttcgaacaccggcaaaccgactgccTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAgg                                                                                                                                                   >  3:5414‑M1/81‑149 (MQ=255)  aGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAg                                                                                                                                                    <  1:212760/147‑1 (MQ=255)  aGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTACTCGCGCGGGCCGAgg                                                                                                                                                   <  6:124417/148‑1 (MQ=255)      gtgCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGGTGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGt                                                                                                                                               <  8:186103/148‑1 (MQ=255)         cTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGt                                                                                                                                           <  3:5696/149‑1 (MQ=255)             gagCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGc                                                                                                                                       <  1:16721/149‑1 (MQ=255)                 cTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgt                                                                                                                                   >  5:355862/1‑149 (MQ=255)                   gATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgtgt                                                                                                                                 >  5:335358/1‑149 (MQ=255)                    aTCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGgtgt                                                                                                                                 <  4:373550/148‑1 (MQ=255)                            gCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGt                                                                                                                         >  8:281140/1‑148 (MQ=255)                              cGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTAc                                                                                                                      >  7:1053/1‑149 (MQ=255)                                            gggTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTg                                                                                                        >  8:64618/1‑149 (MQ=255)                                                  gTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTc                                                                                                  <  5:366919/149‑1 (MQ=255)                                                     aCAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCgg                                                                                                <  8:1053/148‑1 (MQ=255)                                                         cGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTg                                                                                           <  7:64618/149‑1 (MQ=255)                                                                gcgcGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                                                                                    <  7:68893/117‑1 (MQ=255)                                                                gcgcGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACgg                                                                                                                    >  8:68893/1‑117 (MQ=255)                                                                   cgGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAAcc                                                                                 <  6:355862/149‑1 (MQ=255)                                                                      gCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGca                                                                              <  7:99719/149‑1 (MQ=255)                                                                      gCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGca                                                                              >  4:22134/1‑149 (MQ=255)                                                                              gggTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCt                                                                      <  1:208661/149‑1 (MQ=255)                                                                               cctcggcccgcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGGTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtg                                                                     >  3:5414‑M2/70‑149 (MQ=255)                                                                                gTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgt                                                                    >  8:216944/1‑149 (MQ=255)                                                                                 tcggcccgcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCtgtg                                                                   >  5:257118‑M2/68‑149 (MQ=255)                                                                                      CCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGCCCCtgtgcggtt                                                              >  3:22134‑M1/1‑146 (MQ=255)                                                                                       CACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCt                                                             >  7:216944‑M1/1‑149 (MQ=255)                                                                                        gcgcgagcaggcttggcgatacccgagccccgcctaccgccaccaaacgcagtgggccgaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTg                                                            <  6:257118‑M2/89‑1 (MQ=255)                                                                                            cGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGa                                                         <  6:290110/148‑1 (MQ=255)                                                                                                   tggCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCACGCGCGGGCCCAGGCAGTCGGTTTGCCCGTGTTCGAAGGTTACGGCTAGTCCGACTGCGCATCGGTAGTGGCGCTCAACCCCACAGGGGCTGTGCGCCCTCGGAGCGTCgg                                                  >  2:116164/1‑148 (MQ=255)                                                                                                    ggCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGc                                                 >  5:367249/1‑148 (MQ=255)                                                                                                     gCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGGCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCaa                                               <  5:264570/149‑1 (MQ=255)                                                                                                      cGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAg                                              <  7:281140/149‑1 (MQ=255)                                                                                                                ggCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGc                                    <  6:335358/149‑1 (MQ=255)                                                                                                                 gCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCa                                   >  8:190165/1‑149 (MQ=255)                                                                                                                  cTCGGGTATCGCCAAGCCTGCTCGCGCGGGCTGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCAt                                  >  6:149442/1‑149 (MQ=255)                                                                                                                    cGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCAtgt                                >  3:255705/1‑149 (MQ=255)                                                                                                                      ggTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCAtgtg                               >  1:77932/1‑148 (MQ=255)                                                                                                                       gTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCAtgtg                               >  8:222761/1‑147 (MQ=255)                                                                                                                            gCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCAtt                                         >  3:99260/1‑132 (MQ=255)                                                                                                                            gCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCAtt                                         <  4:99260/132‑1 (MQ=255)                                                                                                                             ccAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTg                                                            >  8:150022/1‑112 (MQ=255)                                                                                                                              cAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTgc                                                                  <  4:12742/105‑1 (MQ=255)                                                                                                                               aaGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCa                     >  7:329367/1‑149 (MQ=255)                                                                                                                                                  gaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGt  >  7:316020‑M2/3‑149 (MQ=255)                                                                                                                                                  gaGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGt  <  4:255705‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CAGTGGTGCTCAGAGCCTGATCCTTGTGCCGCAGCTGCTGATGGGGTTGGTGACAGCGATCGAGCGCGGGCTGATGCGGGTCGGCCCACTGCGTTTGGTGGCGGTAGGCGGGGCTCGGGTATCGCCAAGCCTGCTCGCGCGGGCCGAGGCAGTCGGTTTGCCGGTGTTCGAAGGTTACGGCTTGTCCGAGTGCGCCTCGGTAGTGGCGCTCAACCGCACAGGGGCTGTGCGCCCTGGGAGCGTCGGCAAGCCATTGCCGCATGTGCAGGTGCGCATCGCCGAGGATGGCGAAGT  >  NC_002947/3099929‑3100222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.