New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3611287	61 (1.030)	3 (0.050)	3/244	NT	5.1%	coding (2397/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	= 3611333	54 (0.960)					coding (2351/3396 nt)	mcoA	Mn(II) copper oxidase A

GCCTTGCCGTCGCGGCTAAGAATCACGCCTTCCTCGAAGTGCACGTGTACCGGGTGGCTCCAGCCATTGCCGCCGTTGACGATTTTCCACACTTCCAGGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3611183‑3611287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACCCT  <  NC_002947/3611333‑3611279                                                                                                                                                                  GCCTTGCCGTCGCGGCTAAGAATCACGCCTTCCTCGAAGTGCACGTGTACCGGGTGGCTCCAGCCATTGCCGCCGTTGACGATTTTCCACACTTCCAGGGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGC             >  5:270057/1‑149        CGTCGCGGCTAAGAATCACGCCTTCCTCGAAGTGCACGTGTACCGGGTGGCTCCAGCCATTGCCGCCGTTGACGATTTTCCACACTTCCAGGGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCA      <  1:176528/149‑1            GCGGCTAAGAATCACGCCTTCCTCGAAGTGCACGTGTACCGGGTGGCTCCAGCCATTGCCGCCGTTGACGATTTTCCACACTTCCAGGGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACCCT  <  6:270057/149‑1                                                                                                                                                                  GCCTTGCCGTCGCGGCTAAGAATCACGCCTTCCTCGAAGTGCACGTGTACCGGGTGGCTCCAGCCATTGCCGCCGTTGACGATTTTCCACACTTCCAGGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3611183‑3611287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACCCT  <  NC_002947/3611333‑3611279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.