New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3694599 =	53 (0.900)	4 (0.070)	4/248	NT	7.1%	coding (1569/2502 nt)	ligD	DNA ligase D
	?	NC_002947	3694639 =	53 (0.930)					coding (1529/2502 nt)	ligD	DNA ligase D

CCTGCGCGATGACAAGGCGGCAACCGCCATTGACCTGGA‑‑GCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3694641‑3694599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTCGGCTCCGGCAGGCGGCGAGGGCAGGGCTGGCCTGGCGATTT  >  NC_002947/3694639‑3694783                                                                                                                                                                                                CCTGCGCGATGACAAGGCGGCAACCGCCATTGACCTGGA‑‑GCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGG                                                                                                  <  5:145440/92‑1 CCTGCGCGATGACAAGGCGGCAACCGCCATTGACCTGGA‑‑GCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGG                                                                                                  >  6:145440/1‑92   TGCGCGATGACAAGGCGGCAACCGCCATTGACCTGGA‑‑GCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTCGGCT                                       >  5:197543/1‑149          TGACAAGGCGGCAACCGCCATTGACCTGGAGCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTCGGCTCCGG                                   >  6:165101/1‑148                                          GCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTGACGGGTCATCTGGGCCAAGGCGACGTCCGCCCACAACTGCGGTGGCAGCCAGTGCACACCACGCGCGTCGGCTCCGGCAGGCGGCGAGGGCAGGGCTGGCCTGGCGATTT  >  1:66998/1‑149                                                                                                                                                                                                CCTGCGCGATGACAAGGCGGCAACCGCCATTGACCTGGA‑‑GCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3694641‑3694599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTCGGCTCCGGCAGGCGGCGAGGGCAGGGCTGGCCTGGCGATTT  >  NC_002947/3694639‑3694783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.