New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3694599 =	53 (0.900)	4 (0.070)	4/248	NT	7.1%	coding (1569/2502 nt)	ligD	DNA ligase D
	?	NC_002947	3694639 =	53 (0.930)					coding (1529/2502 nt)	ligD	DNA ligase D

AGCGTAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTC  >  NC_002947/3694455‑3694742                                                                                                                                                  |                                                                                                                                                  aaatcgccaggccagccctgccctcgccgcctgccggagccgacgcgcgtggtgtgcactggctgccaccgcagttgtgggcggacgtcgccttggcccagatgacccgtcacggcatcgtgcgccattcggtgttccacggcctgcgc                                                                                                                                                >  1:66998‑M1/146‑149 (MQ=255)   cGTAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑Tcc                                                                                                                                           <  5:45214/149‑1 (MQ=255)   cGTAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑Tc                                                                                                                                            >  5:265954/1‑148 (MQ=255)     tAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAg                                                                                                                                         <  1:112387/149‑1 (MQ=255)     tAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAg                                                                                                                                         <  7:311590/149‑1 (MQ=255)           tCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAAt                                                                                                                                   >  8:261403/1‑149 (MQ=255)                         cTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCt                                                                                                                     >  2:103164/1‑149 (MQ=255)                          ttGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCtt                                                                                                                    >  1:46697/1‑149 (MQ=255)                              tCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCa                                                                                                                >  7:161653/1‑149 (MQ=255)                                  ccggagccgaagcgcgtggtgtgcactggctgcgaccgcagttgttggcggaagtcgcctttgcccagatgacccgtgacggcatcgtgcgccattcggtgttccacggcctGCGCGCTCCAGGTCAATGGCGGTTGCCGCCTTGTCa                                                                                                                >  6:165101‑M1/113‑148 (MQ=255)                                  acCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATcgc                                                                                                            >  8:244223/1‑149 (MQ=255)                                      agccgaagcgcgtggtgtgcactggctgcgaccgcagttgttggcggaagtcgcctttgcccagatgacccgtgacggcatcgtgcgccattcggtgttccacggcctGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCa                                                                                                         >  5:197543‑M1/109‑149 (MQ=255)                                            gggTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCg                                                                                                                               >  4:53094/1‑120 (MQ=255)                                               tCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGaa                                                                                               >  2:185888/1‑149 (MQ=255)                                                 gATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGt                                                                                                   >  6:9082/1‑143 (MQ=255)                                                 gATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGt                                                                                                   <  5:9082/143‑1 (MQ=255)                                                  aTGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATcgc                                                                                                            >  6:31768/1‑133 (MQ=255)                                                  aTGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATcgc                                                                                                            <  5:31768/133‑1 (MQ=255)                                                      cccGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGaa                                                                                        <  8:161653/149‑1 (MQ=255)                                                       ccGGTCGGGGTGGGTCAGCCGCAGTTCACCCATGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAAt                                                                                       <  1:161595/149‑1 (MQ=255)                                                          gTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGgc                                                                                    >  2:5542/1‑149 (MQ=255)                                                                   ggtCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGc                                                                           >  3:231205/1‑149 (MQ=255)                                                                     tCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCg                                                                         >  5:320438/1‑149 (MQ=255)                                                                            cAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACggg                                                                  <  6:265954/149‑1 (MQ=255)                                                                                  aCCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCt                                                            >  7:177713/1‑149 (MQ=255)                                                                                    ccAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTTATTTGCGGGCATGCCGCGG‑‑TCCAGGTCAATGCCGGTTGCCCCATTGTCATCGCGCAGCCCGTGGAACACCGAATGGCGCACGATGCCGAAACGGGTCaaatg                                                           >  1:83520/1‑145 (MQ=255)                                                                                    ccAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTgg                                                          >  6:237391/1‑149 (MQ=255)                                                                                      aGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGc                                                        <  2:46697/149‑1 (MQ=255)                                                                                           ctcAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAg                                                    <  6:297451/148‑1 (MQ=255)                                                                                              aGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAacac                                                                                            <  2:214787/105‑1 (MQ=255)                                                                                              aGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGc                                                  <  1:5542/147‑1 (MQ=255)                                                                                              aGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGa                                                >  8:103760/1‑149 (MQ=255)                                                                                                 cccagatgacccgtgacggcatcgtgcgccattcggtgttccacggcctGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAgg                                                                                                       >  6:145440‑M1/50‑92 (MQ=255)                                                                                                 cccagatgacccgtgacggcatcgtgcgccattcggtgttccacggcctGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAgg                                                                                                       <  5:145440‑M1/43‑1 (MQ=255)                                                                                                    cTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATg                                                                                      >  3:68924/1‑105 (MQ=255)                                                                                                    cTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATg                                                                                      <  4:68924/105‑1 (MQ=255)                                                                                                    cTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCg                                          <  7:261403/149‑1 (MQ=255)                                                                                                       ggCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGc                                         <  8:177713/147‑1 (MQ=255)                                                                                                        gCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACgg                                                                   >  8:349834/1‑120 (MQ=255)                                                                                                        gCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACgg                                                                   <  7:349834/120‑1 (MQ=255)                                                                                                          cTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCcaac                                     >  1:334482/1‑148 (MQ=255)                                                                                                          cTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCcaac                                     >  1:175955/1‑148 (MQ=255)                                                                                                               tgttgCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGc                               >  2:101287/1‑149 (MQ=255)                                                                                                                gttgCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGc                               <  5:237391/148‑1 (MQ=255)                                                                                                                  tgCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGt                            >  8:360194/1‑149 (MQ=255)                                                                                                                   gCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGt                            <  7:244223/148‑1 (MQ=255)                                                                                                                     ggTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGc                         <  7:103760/149‑1 (MQ=255)                                                                                                                         ggATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGc                      <  7:360194/148‑1 (MQ=255)                                                                                                                           aTACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAg                   >  2:130476/1‑149 (MQ=255)                                                                                                                               aGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGca               >  1:12392/1‑149 (MQ=255)                                                                                                                                gTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCcaacaa                                   >  7:358418/1‑128 (MQ=255)                                                                                                                                gTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCcaacaa                                   <  8:358418/128‑1 (MQ=255)                                                                                                                                 tt‑tttGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATTCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGcaca             <  6:320438/149‑1 (MQ=255)                                                                                                                                         gggCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAAt                                                                                       <  1:233887/68‑1 (MQ=255)                                                                                                                                         gggCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAAt                                                                                       >  2:233887/1‑68 (MQ=255)                                                                                                                                           gCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCa                        <  6:212406/129‑1 (MQ=255)                                                                                                                                           gCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCa                        >  5:212406/1‑129 (MQ=255)                                                                                                                                            cATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCtt   <  2:83520/149‑1 (MQ=255)                                                                                                                                             aTGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGTCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTc  <  1:103164/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AGCGTAATACTCGGCGACTTCGCGCTTGGTCACACCCGTGGTGGGGTCGATGACCCGGTCGGGGTGGGTCAGCCGCAGTTCACCCAGGTTCTCAGACGCCTTGGCCTGCTTGTTGCGGTTGGATACAGTT‑TTTGCGGGCATGGCGCGC‑‑TCCAGGTCAATGGCGGTTGCCGCCTTGTCATCGCGCAGGCCGTGGAACACCGAATGGCGCACGATGCCGTCACGGGTCATCTGGGCAAAGGCGACTTCCGCCAACAACTGCGGTCGCAGCCAGTGCACACCACGCGCTTC  >  NC_002947/3694455‑3694742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.