| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3860663 | 46 (0.780) | 3 (0.050) | 3/244 | NT | 6.5% | coding (214/615 nt) | PP_3412 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 3860694 | 42 (0.750) | coding (245/615 nt) | PP_3412 | LuxR family transcriptional regulator | |||||
CGAGCGCGAGCGCTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3860512‑3860663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCGGGCTACCTGAGCCACTTCACTGCCATTG < NC_002947/3860694‑3860548 CGAGCGCGAGCGCTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCC > 1:327728/1‑149 TCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTG < 3:292158/131‑1 TCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTG > 4:292158/1‑131 AATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCA < 2:327728/149‑1 GTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAAT > 1:275475/1‑115 GTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAAT < 2:275475/115‑1 GCCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCG > 3:49295/1‑125 GCCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCG < 4:49295/125‑1 CCTGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCGGGCTACCTGAGCCACTTCACTGCCA < 2:360563/149‑1 TGGCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCGGGCTACCTGAGCCACTTCACTGCCATT > 7:51041/1‑149 GCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCGGGCTACCTGAGCCACTTCACTGCCATTG < 6:83869/148‑1 CGAGCGCGAGCGCTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3860512‑3860663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCGGTCAGCACCATGAACTTCGGTACCGGCTCCAGGCTCTGCAATCGCTTGATGACTTCCATGCCGTCCAGGCCGGGCAGGCCGATGTCGAGAATGACTACGTCCGGGCGCAGTTCGCGGGCTACCTGAGCCACTTCACTGCCATTG < NC_002947/3860694‑3860548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |